Hb_000049_150

Information

Type desease resistance
Description Gene Name: ABC_membrane
Location Contig49: 103395-114685
Sequence    

Annotation

kegg
ID tcc:TCM_003892
description Multidrug resistance-associated protein 5 isoform 1
nr
ID AIU41638.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q7GB25
description ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2
trembl
ID A0A097P9R4
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCC5 PE=2 SV=1
Gene Ontology
ID GO:0000325
description abc transporter c family member 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45261: 103441-114577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_150 0.0 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
2 Hb_000571_160 0.0660760883 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
3 Hb_010809_010 0.0782003432 - - Na+/H+ antiporter [Populus euphratica]
4 Hb_004109_380 0.090756111 - - PREDICTED: callose synthase 9 isoform X4 [Pyrus x bretschneideri]
5 Hb_000170_100 0.0980281111 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
6 Hb_000105_040 0.0998384634 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
7 Hb_006531_020 0.1004968336 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
8 Hb_007576_210 0.1093793893 - - PREDICTED: protein furry homolog [Jatropha curcas]
9 Hb_002027_190 0.1095220582 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
10 Hb_001699_280 0.1099606703 - - PREDICTED: transformation/transcription domain-associated protein [Jatropha curcas]
11 Hb_002005_030 0.110034769 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
12 Hb_011861_080 0.1102229747 - - hypothetical protein JCGZ_06088 [Jatropha curcas]
13 Hb_000331_580 0.1103058624 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
14 Hb_000608_230 0.1114012884 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
15 Hb_003604_050 0.1115866643 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
16 Hb_006907_140 0.1121781334 - - conserved hypothetical protein [Ricinus communis]
17 Hb_123531_010 0.1139128851 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
18 Hb_007632_010 0.1148308128 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
19 Hb_000479_240 0.1149088514 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
20 Hb_178051_070 0.1162326155 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000049_150 Hb_000049_150 Hb_000571_160 Hb_000571_160 Hb_000049_150--Hb_000571_160 Hb_010809_010 Hb_010809_010 Hb_000049_150--Hb_010809_010 Hb_004109_380 Hb_004109_380 Hb_000049_150--Hb_004109_380 Hb_000170_100 Hb_000170_100 Hb_000049_150--Hb_000170_100 Hb_000105_040 Hb_000105_040 Hb_000049_150--Hb_000105_040 Hb_006531_020 Hb_006531_020 Hb_000049_150--Hb_006531_020 Hb_000571_160--Hb_004109_380 Hb_000571_160--Hb_010809_010 Hb_006907_140 Hb_006907_140 Hb_000571_160--Hb_006907_140 Hb_007576_210 Hb_007576_210 Hb_000571_160--Hb_007576_210 Hb_011828_030 Hb_011828_030 Hb_000571_160--Hb_011828_030 Hb_010809_010--Hb_000105_040 Hb_001105_160 Hb_001105_160 Hb_010809_010--Hb_001105_160 Hb_005568_040 Hb_005568_040 Hb_010809_010--Hb_005568_040 Hb_012055_040 Hb_012055_040 Hb_010809_010--Hb_012055_040 Hb_000479_240 Hb_000479_240 Hb_010809_010--Hb_000479_240 Hb_001031_090 Hb_001031_090 Hb_004109_380--Hb_001031_090 Hb_004223_160 Hb_004223_160 Hb_004109_380--Hb_004223_160 Hb_004109_380--Hb_000105_040 Hb_002005_030 Hb_002005_030 Hb_004109_380--Hb_002005_030 Hb_001699_280 Hb_001699_280 Hb_004109_380--Hb_001699_280 Hb_003604_050 Hb_003604_050 Hb_000170_100--Hb_003604_050 Hb_012490_010 Hb_012490_010 Hb_000170_100--Hb_012490_010 Hb_001951_170 Hb_001951_170 Hb_000170_100--Hb_001951_170 Hb_000428_030 Hb_000428_030 Hb_000170_100--Hb_000428_030 Hb_000200_110 Hb_000200_110 Hb_000170_100--Hb_000200_110 Hb_001341_160 Hb_001341_160 Hb_000170_100--Hb_001341_160 Hb_001935_140 Hb_001935_140 Hb_000105_040--Hb_001935_140 Hb_000105_040--Hb_001699_280 Hb_003581_170 Hb_003581_170 Hb_000105_040--Hb_003581_170 Hb_005542_140 Hb_005542_140 Hb_000105_040--Hb_005542_140 Hb_000069_410 Hb_000069_410 Hb_000105_040--Hb_000069_410 Hb_000105_040--Hb_001951_170 Hb_001628_070 Hb_001628_070 Hb_006531_020--Hb_001628_070 Hb_006531_020--Hb_001951_170 Hb_000331_580 Hb_000331_580 Hb_006531_020--Hb_000331_580 Hb_000009_410 Hb_000009_410 Hb_006531_020--Hb_000009_410 Hb_004705_020 Hb_004705_020 Hb_006531_020--Hb_004705_020 Hb_123531_010 Hb_123531_010 Hb_006531_020--Hb_123531_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.4816 20.6417 5.65422 12.0577 11.4638 6.7114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.03126 3.83169 5.3838 16.6408 10.0106

CAGE analysis