Hb_000049_170

Information

Type -
Description -
Location Contig49: 135519-136097
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_002509827.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCE3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1687250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002845_020 0.0886984943 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
3 Hb_006827_030 0.090198023 - - oligopeptide transporter, putative [Ricinus communis]
4 Hb_006588_020 0.0977801977 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
5 Hb_001866_100 0.1028625778 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
6 Hb_000500_360 0.1065818538 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
7 Hb_171168_010 0.1113279868 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
8 Hb_000147_020 0.122364065 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
9 Hb_007035_010 0.1225160213 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
10 Hb_001508_030 0.1259940495 - - hypothetical protein VITISV_029808 [Vitis vinifera]
11 Hb_007113_020 0.1262178723 - - -
12 Hb_007205_020 0.1285880717 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
13 Hb_000640_330 0.1310651722 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000732_180 0.1360716621 - - Uncharacterized protein TCM_030007 [Theobroma cacao]
15 Hb_001579_060 0.1373209224 - - carbonic anhydrase, putative [Ricinus communis]
16 Hb_003494_180 0.1395381584 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
17 Hb_002615_080 0.1420034222 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]
18 Hb_002155_020 0.1424995694 - - PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
19 Hb_000042_310 0.1493031869 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
20 Hb_001501_020 0.1495388774 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]

Gene co-expression network

sample Hb_000049_170 Hb_000049_170 Hb_002845_020 Hb_002845_020 Hb_000049_170--Hb_002845_020 Hb_006827_030 Hb_006827_030 Hb_000049_170--Hb_006827_030 Hb_006588_020 Hb_006588_020 Hb_000049_170--Hb_006588_020 Hb_001866_100 Hb_001866_100 Hb_000049_170--Hb_001866_100 Hb_000500_360 Hb_000500_360 Hb_000049_170--Hb_000500_360 Hb_171168_010 Hb_171168_010 Hb_000049_170--Hb_171168_010 Hb_003494_180 Hb_003494_180 Hb_002845_020--Hb_003494_180 Hb_002845_020--Hb_001866_100 Hb_007205_020 Hb_007205_020 Hb_002845_020--Hb_007205_020 Hb_001301_010 Hb_001301_010 Hb_002845_020--Hb_001301_010 Hb_016637_020 Hb_016637_020 Hb_002845_020--Hb_016637_020 Hb_001579_060 Hb_001579_060 Hb_006827_030--Hb_001579_060 Hb_006827_030--Hb_171168_010 Hb_007035_010 Hb_007035_010 Hb_006827_030--Hb_007035_010 Hb_007113_020 Hb_007113_020 Hb_006827_030--Hb_007113_020 Hb_001883_010 Hb_001883_010 Hb_006827_030--Hb_001883_010 Hb_005092_090 Hb_005092_090 Hb_006588_020--Hb_005092_090 Hb_006588_020--Hb_001866_100 Hb_001345_040 Hb_001345_040 Hb_006588_020--Hb_001345_040 Hb_006588_020--Hb_007035_010 Hb_000009_390 Hb_000009_390 Hb_006588_020--Hb_000009_390 Hb_001866_100--Hb_007035_010 Hb_001866_100--Hb_000009_390 Hb_001866_100--Hb_007205_020 Hb_031862_200 Hb_031862_200 Hb_001866_100--Hb_031862_200 Hb_000147_020 Hb_000147_020 Hb_000500_360--Hb_000147_020 Hb_001501_020 Hb_001501_020 Hb_000500_360--Hb_001501_020 Hb_009102_010 Hb_009102_010 Hb_000500_360--Hb_009102_010 Hb_000500_360--Hb_002845_020 Hb_001285_020 Hb_001285_020 Hb_000500_360--Hb_001285_020 Hb_171168_010--Hb_007113_020 Hb_171168_010--Hb_001579_060 Hb_002155_020 Hb_002155_020 Hb_171168_010--Hb_002155_020 Hb_002030_090 Hb_002030_090 Hb_171168_010--Hb_002030_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.387874 0.604566 0.150819 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.39725 1.18944

CAGE analysis