Hb_000049_240

Information

Type -
Description -
Location Contig49: 196163-196908
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25610g
description POPTRDRAFT_816966; hypothetical protein
nr
ID XP_012085203.1
description PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JR61
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17604 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_240 0.0 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
2 Hb_000868_100 0.2017832818 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A [Jatropha curcas]
3 Hb_002675_200 0.2374244385 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
4 Hb_007425_020 0.2416209733 transcription factor TF Family: ERF PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Jatropha curcas]
5 Hb_000671_170 0.2476741276 - - kinase, putative [Ricinus communis]
6 Hb_003687_030 0.2486415161 - - protein phosphatase 2c, putative [Ricinus communis]
7 Hb_000694_060 0.249909594 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
8 Hb_001470_070 0.251757551 - - metal ion binding protein, putative [Ricinus communis]
9 Hb_000139_100 0.2598011359 - - PREDICTED: sugar transport protein 13-like [Jatropha curcas]
10 Hb_000672_150 0.2633884543 - - Patatin T5 precursor, putative [Ricinus communis]
11 Hb_001113_030 0.2675216828 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
12 Hb_003120_040 0.2684280328 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
13 Hb_011909_140 0.2691636427 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
14 Hb_005144_190 0.2700188846 - - hypothetical protein F383_09558 [Gossypium arboreum]
15 Hb_028707_070 0.2703171981 - - short-chain dehydrogenase, putative [Ricinus communis]
16 Hb_168707_040 0.2709164545 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
17 Hb_089032_010 0.272503635 - - PREDICTED: flotillin-like protein 3 [Jatropha curcas]
18 Hb_007849_010 0.2746946969 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
19 Hb_008173_030 0.2769946361 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
20 Hb_156850_080 0.2785324566 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]

Gene co-expression network

sample Hb_000049_240 Hb_000049_240 Hb_000868_100 Hb_000868_100 Hb_000049_240--Hb_000868_100 Hb_002675_200 Hb_002675_200 Hb_000049_240--Hb_002675_200 Hb_007425_020 Hb_007425_020 Hb_000049_240--Hb_007425_020 Hb_000671_170 Hb_000671_170 Hb_000049_240--Hb_000671_170 Hb_003687_030 Hb_003687_030 Hb_000049_240--Hb_003687_030 Hb_000694_060 Hb_000694_060 Hb_000049_240--Hb_000694_060 Hb_000868_100--Hb_000671_170 Hb_000868_100--Hb_000694_060 Hb_000671_160 Hb_000671_160 Hb_000868_100--Hb_000671_160 Hb_008173_030 Hb_008173_030 Hb_000868_100--Hb_008173_030 Hb_004460_050 Hb_004460_050 Hb_000868_100--Hb_004460_050 Hb_001470_070 Hb_001470_070 Hb_002675_200--Hb_001470_070 Hb_128524_020 Hb_128524_020 Hb_002675_200--Hb_128524_020 Hb_011618_100 Hb_011618_100 Hb_002675_200--Hb_011618_100 Hb_128486_010 Hb_128486_010 Hb_002675_200--Hb_128486_010 Hb_089140_110 Hb_089140_110 Hb_002675_200--Hb_089140_110 Hb_008768_020 Hb_008768_020 Hb_002675_200--Hb_008768_020 Hb_000092_120 Hb_000092_120 Hb_007425_020--Hb_000092_120 Hb_000320_020 Hb_000320_020 Hb_007425_020--Hb_000320_020 Hb_012239_010 Hb_012239_010 Hb_007425_020--Hb_012239_010 Hb_000386_050 Hb_000386_050 Hb_007425_020--Hb_000386_050 Hb_002660_120 Hb_002660_120 Hb_007425_020--Hb_002660_120 Hb_007425_020--Hb_011618_100 Hb_000671_170--Hb_000671_160 Hb_000672_150 Hb_000672_150 Hb_000671_170--Hb_000672_150 Hb_001959_120 Hb_001959_120 Hb_000671_170--Hb_001959_120 Hb_001113_030 Hb_001113_030 Hb_000671_170--Hb_001113_030 Hb_000671_170--Hb_008173_030 Hb_001675_030 Hb_001675_030 Hb_003687_030--Hb_001675_030 Hb_000886_030 Hb_000886_030 Hb_003687_030--Hb_000886_030 Hb_001728_020 Hb_001728_020 Hb_003687_030--Hb_001728_020 Hb_172632_050 Hb_172632_050 Hb_003687_030--Hb_172632_050 Hb_028707_070 Hb_028707_070 Hb_003687_030--Hb_028707_070 Hb_000529_280 Hb_000529_280 Hb_003687_030--Hb_000529_280 Hb_002374_380 Hb_002374_380 Hb_000694_060--Hb_002374_380 Hb_007017_010 Hb_007017_010 Hb_000694_060--Hb_007017_010 Hb_008948_120 Hb_008948_120 Hb_000694_060--Hb_008948_120 Hb_000948_080 Hb_000948_080 Hb_000694_060--Hb_000948_080 Hb_002236_050 Hb_002236_050 Hb_000694_060--Hb_002236_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0418735 13.0518 3.54927 2.03161 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.42805 10.9157 0.804084 4.31336 2.07668

CAGE analysis