Hb_000049_250

Information

Type -
Description -
Location Contig49: 200530-212323
Sequence    

Annotation

kegg
ID rcu:RCOM_0996070
description nucleotide binding protein, putative
nr
ID XP_012085199.1
description PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
swissprot
ID Q9C0C7
description Activating molecule in BECN1-regulated autophagy protein 1 OS=Homo sapiens GN=AMBRA1 PE=1 SV=2
trembl
ID A0A067K2E8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17603 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45269: 211397-212177
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_250 0.0 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
2 Hb_011925_020 0.0595339174 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
3 Hb_000321_090 0.0677678923 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
4 Hb_000080_110 0.0678425411 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
5 Hb_033799_010 0.0729133508 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
6 Hb_005074_020 0.0729730359 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
7 Hb_000220_120 0.0732199569 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
8 Hb_000035_010 0.0765037483 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
9 Hb_001322_180 0.084825513 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
10 Hb_006478_030 0.0858530168 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
11 Hb_000834_230 0.0871696251 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
12 Hb_002357_070 0.0888834066 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
13 Hb_000318_150 0.0894190467 - - RNA-binding protein Nova-1, putative [Ricinus communis]
14 Hb_020805_180 0.0912668607 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
15 Hb_006829_100 0.0916719456 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000787_200 0.091909237 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000009_120 0.0919639305 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
18 Hb_000271_120 0.0922590695 - - PREDICTED: U-box domain-containing protein 13-like [Nelumbo nucifera]
19 Hb_002027_190 0.0923919604 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
20 Hb_080147_050 0.0932486724 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000049_250 Hb_000049_250 Hb_011925_020 Hb_011925_020 Hb_000049_250--Hb_011925_020 Hb_000321_090 Hb_000321_090 Hb_000049_250--Hb_000321_090 Hb_000080_110 Hb_000080_110 Hb_000049_250--Hb_000080_110 Hb_033799_010 Hb_033799_010 Hb_000049_250--Hb_033799_010 Hb_005074_020 Hb_005074_020 Hb_000049_250--Hb_005074_020 Hb_000220_120 Hb_000220_120 Hb_000049_250--Hb_000220_120 Hb_011925_020--Hb_005074_020 Hb_000271_120 Hb_000271_120 Hb_011925_020--Hb_000271_120 Hb_011925_020--Hb_000080_110 Hb_011925_020--Hb_000321_090 Hb_005181_050 Hb_005181_050 Hb_011925_020--Hb_005181_050 Hb_000321_090--Hb_000080_110 Hb_080147_050 Hb_080147_050 Hb_000321_090--Hb_080147_050 Hb_002027_190 Hb_002027_190 Hb_000321_090--Hb_002027_190 Hb_020805_180 Hb_020805_180 Hb_000321_090--Hb_020805_180 Hb_001322_180 Hb_001322_180 Hb_000321_090--Hb_001322_180 Hb_000080_110--Hb_005074_020 Hb_000080_110--Hb_033799_010 Hb_006478_030 Hb_006478_030 Hb_000080_110--Hb_006478_030 Hb_171554_040 Hb_171554_040 Hb_033799_010--Hb_171554_040 Hb_001511_180 Hb_001511_180 Hb_033799_010--Hb_001511_180 Hb_007245_020 Hb_007245_020 Hb_033799_010--Hb_007245_020 Hb_033799_010--Hb_005074_020 Hb_011883_020 Hb_011883_020 Hb_005074_020--Hb_011883_020 Hb_027760_060 Hb_027760_060 Hb_005074_020--Hb_027760_060 Hb_009615_160 Hb_009615_160 Hb_005074_020--Hb_009615_160 Hb_002276_040 Hb_002276_040 Hb_005074_020--Hb_002276_040 Hb_000200_110 Hb_000200_110 Hb_000220_120--Hb_000200_110 Hb_000787_200 Hb_000787_200 Hb_000220_120--Hb_000787_200 Hb_001477_020 Hb_001477_020 Hb_000220_120--Hb_001477_020 Hb_000428_030 Hb_000428_030 Hb_000220_120--Hb_000428_030 Hb_000318_150 Hb_000318_150 Hb_000220_120--Hb_000318_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.97342 9.60117 5.80604 5.98737 2.90757 4.70582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.65869 2.64629 3.4867 12.9125 8.01105

CAGE analysis