Hb_000049_260

Information

Type -
Description -
Location Contig49: 213744-225456
Sequence    

Annotation

kegg
ID rcu:RCOM_0996060
description WD-repeat protein, putative
nr
ID XP_002533626.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q28D01
description WD repeat-containing protein 26 OS=Xenopus tropicalis GN=wdr26 PE=2 SV=2
trembl
ID B9T5V7
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0996060 PE=4 SV=1
Gene Ontology
ID GO:0016757
description wd repeat-containing protein 26

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45270: 214005-221544 , PASA_asmbl_45271: 221638-225034
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_260 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_020831_030 0.0585047087 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002818_030 0.0588805508 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
4 Hb_002234_170 0.0635062544 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
5 Hb_001195_530 0.0648371873 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002798_070 0.0675693509 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
7 Hb_013399_100 0.0681632262 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011491_010 0.0685750117 - - Protein YME1, putative [Ricinus communis]
9 Hb_001818_070 0.0701429171 - - carbon catabolite repressor protein, putative [Ricinus communis]
10 Hb_007163_120 0.0714986915 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
11 Hb_003494_020 0.0718592232 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
12 Hb_001089_050 0.0719941111 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
13 Hb_000331_670 0.072311218 - - PREDICTED: protein tipD [Jatropha curcas]
14 Hb_000172_430 0.0726393188 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001838_060 0.0727302758 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
16 Hb_140506_010 0.0728866164 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Jatropha curcas]
17 Hb_007765_110 0.0728894611 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
18 Hb_000861_080 0.0751534401 - - PREDICTED: protein ELC-like [Jatropha curcas]
19 Hb_015934_040 0.0754246956 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
20 Hb_000479_220 0.0759105829 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]

Gene co-expression network

sample Hb_000049_260 Hb_000049_260 Hb_020831_030 Hb_020831_030 Hb_000049_260--Hb_020831_030 Hb_002818_030 Hb_002818_030 Hb_000049_260--Hb_002818_030 Hb_002234_170 Hb_002234_170 Hb_000049_260--Hb_002234_170 Hb_001195_530 Hb_001195_530 Hb_000049_260--Hb_001195_530 Hb_002798_070 Hb_002798_070 Hb_000049_260--Hb_002798_070 Hb_013399_100 Hb_013399_100 Hb_000049_260--Hb_013399_100 Hb_020831_030--Hb_001195_530 Hb_003640_040 Hb_003640_040 Hb_020831_030--Hb_003640_040 Hb_002056_090 Hb_002056_090 Hb_020831_030--Hb_002056_090 Hb_004195_200 Hb_004195_200 Hb_020831_030--Hb_004195_200 Hb_020831_030--Hb_013399_100 Hb_004916_010 Hb_004916_010 Hb_002818_030--Hb_004916_010 Hb_019863_070 Hb_019863_070 Hb_002818_030--Hb_019863_070 Hb_003849_110 Hb_003849_110 Hb_002818_030--Hb_003849_110 Hb_002818_030--Hb_002798_070 Hb_000069_310 Hb_000069_310 Hb_002818_030--Hb_000069_310 Hb_003494_020 Hb_003494_020 Hb_002234_170--Hb_003494_020 Hb_002783_040 Hb_002783_040 Hb_002234_170--Hb_002783_040 Hb_002234_170--Hb_002798_070 Hb_006649_050 Hb_006649_050 Hb_002234_170--Hb_006649_050 Hb_000574_400 Hb_000574_400 Hb_002234_170--Hb_000574_400 Hb_105105_010 Hb_105105_010 Hb_001195_530--Hb_105105_010 Hb_001195_530--Hb_003640_040 Hb_001408_140 Hb_001408_140 Hb_001195_530--Hb_001408_140 Hb_001195_530--Hb_002056_090 Hb_002205_250 Hb_002205_250 Hb_001195_530--Hb_002205_250 Hb_012779_090 Hb_012779_090 Hb_002798_070--Hb_012779_090 Hb_000243_250 Hb_000243_250 Hb_002798_070--Hb_000243_250 Hb_002798_070--Hb_002783_040 Hb_162275_050 Hb_162275_050 Hb_002798_070--Hb_162275_050 Hb_000442_010 Hb_000442_010 Hb_002798_070--Hb_000442_010 Hb_001409_020 Hb_001409_020 Hb_013399_100--Hb_001409_020 Hb_000060_090 Hb_000060_090 Hb_013399_100--Hb_000060_090 Hb_105105_020 Hb_105105_020 Hb_013399_100--Hb_105105_020 Hb_003504_030 Hb_003504_030 Hb_013399_100--Hb_003504_030 Hb_000780_230 Hb_000780_230 Hb_013399_100--Hb_000780_230 Hb_010618_010 Hb_010618_010 Hb_013399_100--Hb_010618_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.69731 14.6248 6.79327 8.67473 9.265 10.0982
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.45228 10.1037 9.35511 6.29555 7.81691

CAGE analysis