Hb_000049_270

Information

Type -
Description -
Location Contig49: 235763-244597
Sequence    

Annotation

kegg
ID rcu:RCOM_0995950
description ATP binding protein, putative (EC:2.7.10.2)
nr
ID XP_012085194.1
description PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
swissprot
ID Q8RWW0
description Receptor-like serine/threonine-protein kinase ALE2 OS=Arabidopsis thaliana GN=ALE2 PE=1 SV=1
trembl
ID B9T5V6
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0995950 PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor-like serine threonine-protein kinase ale2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45272: 235801-244520
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_270 0.0 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
2 Hb_006570_090 0.0675284424 - - tubulin beta chain, putative [Ricinus communis]
3 Hb_004007_070 0.1006223474 - - adenylsulfate kinase, putative [Ricinus communis]
4 Hb_000023_110 0.1011599092 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
5 Hb_000098_170 0.1060672964 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
6 Hb_012807_150 0.1257269901 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
7 Hb_006889_030 0.1321210796 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
8 Hb_003606_050 0.1352070177 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
9 Hb_012395_110 0.1356211123 - - PREDICTED: peroxygenase [Jatropha curcas]
10 Hb_012286_060 0.1364330519 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
11 Hb_003680_030 0.1389926767 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
12 Hb_000963_050 0.1393484978 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
13 Hb_001450_040 0.1425235993 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
14 Hb_000271_220 0.1453412424 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
15 Hb_000692_100 0.1473991661 - - calcium-dependent protein kinase, putative [Ricinus communis]
16 Hb_000086_090 0.1487100043 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
17 Hb_000603_020 0.1494903783 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
18 Hb_000260_110 0.1497171801 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
19 Hb_011930_180 0.1497405178 - - conserved hypothetical protein [Ricinus communis]
20 Hb_064546_010 0.1497419088 - - PREDICTED: peroxidase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000049_270 Hb_000049_270 Hb_006570_090 Hb_006570_090 Hb_000049_270--Hb_006570_090 Hb_004007_070 Hb_004007_070 Hb_000049_270--Hb_004007_070 Hb_000023_110 Hb_000023_110 Hb_000049_270--Hb_000023_110 Hb_000098_170 Hb_000098_170 Hb_000049_270--Hb_000098_170 Hb_012807_150 Hb_012807_150 Hb_000049_270--Hb_012807_150 Hb_006889_030 Hb_006889_030 Hb_000049_270--Hb_006889_030 Hb_006570_090--Hb_012807_150 Hb_006570_090--Hb_004007_070 Hb_134014_010 Hb_134014_010 Hb_006570_090--Hb_134014_010 Hb_000603_020 Hb_000603_020 Hb_006570_090--Hb_000603_020 Hb_006570_090--Hb_000023_110 Hb_012395_110 Hb_012395_110 Hb_004007_070--Hb_012395_110 Hb_004007_070--Hb_000098_170 Hb_000086_090 Hb_000086_090 Hb_004007_070--Hb_000086_090 Hb_000365_280 Hb_000365_280 Hb_004007_070--Hb_000365_280 Hb_002893_030 Hb_002893_030 Hb_004007_070--Hb_002893_030 Hb_003408_010 Hb_003408_010 Hb_000023_110--Hb_003408_010 Hb_000327_360 Hb_000327_360 Hb_000023_110--Hb_000327_360 Hb_000023_110--Hb_012807_150 Hb_003606_050 Hb_003606_050 Hb_000023_110--Hb_003606_050 Hb_031284_030 Hb_031284_030 Hb_000023_110--Hb_031284_030 Hb_000098_170--Hb_000086_090 Hb_000098_170--Hb_006570_090 Hb_000098_170--Hb_006889_030 Hb_000098_170--Hb_012395_110 Hb_000283_140 Hb_000283_140 Hb_012807_150--Hb_000283_140 Hb_000271_220 Hb_000271_220 Hb_012807_150--Hb_000271_220 Hb_006120_060 Hb_006120_060 Hb_012807_150--Hb_006120_060 Hb_012807_150--Hb_000603_020 Hb_012807_150--Hb_000327_360 Hb_000638_060 Hb_000638_060 Hb_012807_150--Hb_000638_060 Hb_001119_070 Hb_001119_070 Hb_006889_030--Hb_001119_070 Hb_001459_090 Hb_001459_090 Hb_006889_030--Hb_001459_090 Hb_000236_180 Hb_000236_180 Hb_006889_030--Hb_000236_180 Hb_006889_030--Hb_031284_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.31022 5.78131 14.8644 30.3744 1.87262 0.880674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.897575 0.470885 2.25255 3.36145 10.4567

CAGE analysis