Hb_000049_330

Information

Type -
Description -
Location Contig49: 415395-416258
Sequence    

Annotation

kegg
ID pop:POPTR_0003s10110g
description POPTRDRAFT_799816; lipase family protein
nr
ID XP_012065096.1
description PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
swissprot
ID Q9SJI7
description Phospholipase A1-IIdelta OS=Arabidopsis thaliana GN=At2g42690 PE=1 SV=1
trembl
ID A0A067LIA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22119 PE=4 SV=1
Gene Ontology
ID GO:0009507
description phospholipase a1-iidelta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 023_C01.ab1: 415318-415852

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_330 0.0 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
2 Hb_011344_030 0.1128352349 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
3 Hb_003905_030 0.1138466596 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
4 Hb_023344_040 0.1178077215 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000992_090 0.1192763259 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
6 Hb_001277_430 0.1216854574 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
7 Hb_000103_240 0.1231173174 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [Jatropha curcas]
8 Hb_000111_460 0.124635834 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
9 Hb_004631_020 0.1247571254 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
10 Hb_014361_120 0.1291821634 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
11 Hb_001135_170 0.1301580257 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
12 Hb_000039_210 0.1302722228 - - PREDICTED: uncharacterized protein LOC105649449 [Jatropha curcas]
13 Hb_000009_470 0.1309116293 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
14 Hb_107647_010 0.1332508036 - - PREDICTED: uncharacterized protein ycf39 [Jatropha curcas]
15 Hb_004712_230 0.1339148179 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
16 Hb_001517_060 0.134663627 - - phosphoribulose kinase, putative [Ricinus communis]
17 Hb_029079_010 0.1358848663 - - receptor-kinase, putative [Ricinus communis]
18 Hb_009771_080 0.1369217431 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
19 Hb_000029_390 0.1371802832 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
20 Hb_000841_040 0.1389766822 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000049_330 Hb_000049_330 Hb_011344_030 Hb_011344_030 Hb_000049_330--Hb_011344_030 Hb_003905_030 Hb_003905_030 Hb_000049_330--Hb_003905_030 Hb_023344_040 Hb_023344_040 Hb_000049_330--Hb_023344_040 Hb_000992_090 Hb_000992_090 Hb_000049_330--Hb_000992_090 Hb_001277_430 Hb_001277_430 Hb_000049_330--Hb_001277_430 Hb_000103_240 Hb_000103_240 Hb_000049_330--Hb_000103_240 Hb_000009_470 Hb_000009_470 Hb_011344_030--Hb_000009_470 Hb_011344_030--Hb_023344_040 Hb_000111_460 Hb_000111_460 Hb_011344_030--Hb_000111_460 Hb_001135_170 Hb_001135_170 Hb_011344_030--Hb_001135_170 Hb_007044_020 Hb_007044_020 Hb_011344_030--Hb_007044_020 Hb_011344_030--Hb_000992_090 Hb_010080_070 Hb_010080_070 Hb_003905_030--Hb_010080_070 Hb_000360_010 Hb_000360_010 Hb_003905_030--Hb_000360_010 Hb_156850_020 Hb_156850_020 Hb_003905_030--Hb_156850_020 Hb_003905_030--Hb_000103_240 Hb_001257_110 Hb_001257_110 Hb_003905_030--Hb_001257_110 Hb_011900_020 Hb_011900_020 Hb_003905_030--Hb_011900_020 Hb_023344_040--Hb_000992_090 Hb_023344_040--Hb_000111_460 Hb_023344_040--Hb_001135_170 Hb_023344_040--Hb_000009_470 Hb_014361_120 Hb_014361_120 Hb_023344_040--Hb_014361_120 Hb_000992_090--Hb_001135_170 Hb_000992_090--Hb_000009_470 Hb_000029_390 Hb_000029_390 Hb_000992_090--Hb_000029_390 Hb_000992_090--Hb_000103_240 Hb_029079_010 Hb_029079_010 Hb_001277_430--Hb_029079_010 Hb_001416_130 Hb_001416_130 Hb_001277_430--Hb_001416_130 Hb_117807_020 Hb_117807_020 Hb_001277_430--Hb_117807_020 Hb_000589_340 Hb_000589_340 Hb_001277_430--Hb_000589_340 Hb_005000_120 Hb_005000_120 Hb_001277_430--Hb_005000_120 Hb_000450_050 Hb_000450_050 Hb_001277_430--Hb_000450_050 Hb_000103_240--Hb_023344_040 Hb_000103_240--Hb_001135_170 Hb_106552_030 Hb_106552_030 Hb_000103_240--Hb_106552_030 Hb_028960_010 Hb_028960_010 Hb_000103_240--Hb_028960_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0265628 2.32308 12.9198 3.53835 0.0249089 0.116532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.40323 0.479768 0 0.174336 41.8107

CAGE analysis