Hb_000050_090

Information

Type transcription factor
Description TF Family: HB
Location Contig50: 109676-113782
Sequence    

Annotation

kegg
ID rcu:RCOM_1585190
description homeobox protein knotted-1, putative
nr
ID XP_002510027.1
description homeobox protein knotted-1, putative [Ricinus communis]
swissprot
ID O04135
description Homeobox protein knotted-1-like 2 OS=Malus domestica PE=2 SV=1
trembl
ID B9R6T4
description Homeobox protein knotted-1, putative OS=Ricinus communis GN=RCOM_1585190 PE=4 SV=1
Gene Ontology
ID GO:0005634
description knat1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45729: 109702-116195
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000050_090 0.0 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
2 Hb_000050_100 0.0972628318 - - PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
3 Hb_017987_090 0.1293516908 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
4 Hb_000703_060 0.1661168164 - - phosphoenolpyruvate carboxylase [Manihot esculenta]
5 Hb_005702_030 0.1704998347 - - PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
6 Hb_000703_240 0.1763869796 - - -
7 Hb_011344_170 0.176792498 - - PREDICTED: UDP-glucuronate 4-epimerase 4-like, partial [Camelina sativa]
8 Hb_026698_010 0.1877021837 - - 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
9 Hb_010407_070 0.1899560735 - - hypothetical protein POPTR_0008s16750g [Populus trichocarpa]
10 Hb_017987_070 0.193110806 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
11 Hb_001301_190 0.1978916079 - - -
12 Hb_183510_010 0.2027277566 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
13 Hb_005038_020 0.2043884713 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_015401_020 0.2061302428 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
15 Hb_001817_180 0.2063993903 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
16 Hb_000340_010 0.2070788088 - - -
17 Hb_007849_040 0.2099784865 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
18 Hb_000029_160 0.2104068167 - - Nitrilase, putative [Ricinus communis]
19 Hb_002078_420 0.2121619884 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
20 Hb_001274_020 0.2121800937 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000050_090 Hb_000050_090 Hb_000050_100 Hb_000050_100 Hb_000050_090--Hb_000050_100 Hb_017987_090 Hb_017987_090 Hb_000050_090--Hb_017987_090 Hb_000703_060 Hb_000703_060 Hb_000050_090--Hb_000703_060 Hb_005702_030 Hb_005702_030 Hb_000050_090--Hb_005702_030 Hb_000703_240 Hb_000703_240 Hb_000050_090--Hb_000703_240 Hb_011344_170 Hb_011344_170 Hb_000050_090--Hb_011344_170 Hb_000050_100--Hb_017987_090 Hb_000050_100--Hb_000703_060 Hb_010407_070 Hb_010407_070 Hb_000050_100--Hb_010407_070 Hb_026698_010 Hb_026698_010 Hb_000050_100--Hb_026698_010 Hb_000139_240 Hb_000139_240 Hb_000050_100--Hb_000139_240 Hb_000953_140 Hb_000953_140 Hb_017987_090--Hb_000953_140 Hb_007849_040 Hb_007849_040 Hb_017987_090--Hb_007849_040 Hb_015401_020 Hb_015401_020 Hb_017987_090--Hb_015401_020 Hb_001817_180 Hb_001817_180 Hb_017987_090--Hb_001817_180 Hb_000703_060--Hb_000139_240 Hb_000703_060--Hb_017987_090 Hb_005038_020 Hb_005038_020 Hb_000703_060--Hb_005038_020 Hb_011861_070 Hb_011861_070 Hb_000703_060--Hb_011861_070 Hb_000703_060--Hb_011344_170 Hb_017434_060 Hb_017434_060 Hb_005702_030--Hb_017434_060 Hb_005702_030--Hb_011344_170 Hb_005702_030--Hb_000703_240 Hb_007307_030 Hb_007307_030 Hb_005702_030--Hb_007307_030 Hb_001769_010 Hb_001769_010 Hb_005702_030--Hb_001769_010 Hb_000497_180 Hb_000497_180 Hb_000703_240--Hb_000497_180 Hb_000703_240--Hb_026698_010 Hb_000640_300 Hb_000640_300 Hb_000703_240--Hb_000640_300 Hb_000589_400 Hb_000589_400 Hb_000703_240--Hb_000589_400 Hb_005052_010 Hb_005052_010 Hb_011344_170--Hb_005052_010 Hb_011344_170--Hb_007307_030 Hb_164010_070 Hb_164010_070 Hb_011344_170--Hb_164010_070 Hb_000853_120 Hb_000853_120 Hb_011344_170--Hb_000853_120 Hb_011344_170--Hb_017434_060 Hb_001989_020 Hb_001989_020 Hb_011344_170--Hb_001989_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.7505 67.753 0.00814838 0.0791427 54.9302 34.2039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.1098 18.1979 32.8805 27.5898 0

CAGE analysis