Hb_000050_120

Information

Type -
Description -
Location Contig50: 203890-209338
Sequence    

Annotation

kegg
ID pop:POPTR_0002s11380g
description POPTRDRAFT_411700; hypothetical protein
nr
ID XP_012068138.1
description PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
swissprot
ID P36917
description Endo-1,4-beta-xylanase A OS=Thermoanaerobacterium saccharolyticum GN=xynA PE=1 SV=1
trembl
ID A0A067KZC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15968 PE=4 SV=1
Gene Ontology
ID GO:0004553
description glycosyl hydrolase family 10 protein carbohydrate-binding domain-containing protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45731: 203933-209095 , PASA_asmbl_45732: 208969-209322
cDNA
(Sanger)
(ID:Location)		 018_E14.ab1: 207914-208022

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000050_120 0.0 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
2 Hb_002078_040 0.0583758092 - - protein with unknown function [Ricinus communis]
3 Hb_003304_080 0.0654930677 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
4 Hb_000365_350 0.079534202 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
5 Hb_002172_030 0.0850078938 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
6 Hb_012654_020 0.0874524592 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007810_040 0.0996783047 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]
8 Hb_000088_180 0.1005299532 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
9 Hb_000300_540 0.1050025565 - - PREDICTED: syntaxin-132 [Jatropha curcas]
10 Hb_001776_080 0.1069504522 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
11 Hb_011021_030 0.1083085241 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
12 Hb_098315_100 0.1092790346 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
13 Hb_004032_460 0.1100818921 - - -
14 Hb_012807_120 0.1118812338 - - metal ion binding protein, putative [Ricinus communis]
15 Hb_011609_190 0.1134224048 - - 14-3-3 protein 2 [Hevea brasiliensis]
16 Hb_000173_370 0.113964292 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
17 Hb_000483_370 0.1149716548 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005410_010 0.1161164734 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
19 Hb_001628_110 0.1180325725 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
20 Hb_000376_150 0.1184464328 - - O-acyltransferase WSD1 [Gossypium arboreum]

Gene co-expression network

sample Hb_000050_120 Hb_000050_120 Hb_002078_040 Hb_002078_040 Hb_000050_120--Hb_002078_040 Hb_003304_080 Hb_003304_080 Hb_000050_120--Hb_003304_080 Hb_000365_350 Hb_000365_350 Hb_000050_120--Hb_000365_350 Hb_002172_030 Hb_002172_030 Hb_000050_120--Hb_002172_030 Hb_012654_020 Hb_012654_020 Hb_000050_120--Hb_012654_020 Hb_007810_040 Hb_007810_040 Hb_000050_120--Hb_007810_040 Hb_002078_040--Hb_003304_080 Hb_002078_040--Hb_007810_040 Hb_002078_040--Hb_012654_020 Hb_002078_040--Hb_002172_030 Hb_154381_050 Hb_154381_050 Hb_002078_040--Hb_154381_050 Hb_003304_080--Hb_007810_040 Hb_095397_010 Hb_095397_010 Hb_003304_080--Hb_095397_010 Hb_043637_010 Hb_043637_010 Hb_003304_080--Hb_043637_010 Hb_003304_080--Hb_012654_020 Hb_012807_120 Hb_012807_120 Hb_000365_350--Hb_012807_120 Hb_000088_180 Hb_000088_180 Hb_000365_350--Hb_000088_180 Hb_004032_460 Hb_004032_460 Hb_000365_350--Hb_004032_460 Hb_098315_100 Hb_098315_100 Hb_000365_350--Hb_098315_100 Hb_006478_070 Hb_006478_070 Hb_000365_350--Hb_006478_070 Hb_002172_030--Hb_012654_020 Hb_001846_080 Hb_001846_080 Hb_002172_030--Hb_001846_080 Hb_005410_010 Hb_005410_010 Hb_002172_030--Hb_005410_010 Hb_011609_190 Hb_011609_190 Hb_002172_030--Hb_011609_190 Hb_002172_030--Hb_154381_050 Hb_012654_020--Hb_005410_010 Hb_012654_020--Hb_011609_190 Hb_001776_080 Hb_001776_080 Hb_012654_020--Hb_001776_080 Hb_007178_010 Hb_007178_010 Hb_007810_040--Hb_007178_010 Hb_002232_180 Hb_002232_180 Hb_007810_040--Hb_002232_180 Hb_007810_040--Hb_095397_010 Hb_007810_040--Hb_043637_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
124.271 9.86493 3.26133 9.45084 136.522 93.7549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.5769 24.6668 40.6412 5.56139 5.05754

CAGE analysis