Hb_000050_130

Information

Type -
Description -
Location Contig50: 210803-218858
Sequence    

Annotation

kegg
ID smo:SELMODRAFT_36878
description hypothetical protein
nr
ID EMS61161.1
description Putative Pol polyprotein from transposon element Bs1 [Triticum urartu]
swissprot
ID P14768
description Endo-1,4-beta-xylanase A OS=Cellvibrio japonicus (strain Ueda107) GN=xynA PE=1 SV=2
trembl
ID M7ZNE2
description Putative Pol polyprotein from transposon element Bs1 OS=Triticum urartu GN=TRIUR3_25842 PE=4 SV=1
Gene Ontology
ID GO:0016798
description hydrolyzing o-glycosyl

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000050_130 0.0 - - Putative Pol polyprotein from transposon element Bs1 [Triticum urartu]
2 Hb_006683_010 0.1837485698 - - cell wall invertase [Manihot esculenta]
3 Hb_001652_110 0.2115203652 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
4 Hb_002675_120 0.2281365506 - - DNA-repair protein xrcc1, putative [Ricinus communis]
5 Hb_008779_010 0.2599326466 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
6 Hb_008643_010 0.264118051 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
7 Hb_054362_010 0.2694547364 - - PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
8 Hb_002774_040 0.2724954134 - - PREDICTED: annexin D1 [Jatropha curcas]
9 Hb_000160_100 0.2733580909 - - PREDICTED: uncharacterized transporter YBR287W-like [Populus euphratica]
10 Hb_127993_010 0.2794059431 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
11 Hb_000574_550 0.281720372 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
12 Hb_003226_290 0.293478197 - - catalytic, putative [Ricinus communis]
13 Hb_169574_010 0.3040758539 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
14 Hb_048874_010 0.3055379811 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
15 Hb_001638_220 0.3074507579 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005007_040 0.3086248321 - - hypothetical protein VITISV_032357 [Vitis vinifera]
17 Hb_005799_040 0.3091944225 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
18 Hb_008246_050 0.3092215831 - - -
19 Hb_001956_030 0.3098565515 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Populus euphratica]
20 Hb_000065_050 0.312971936 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_000050_130 Hb_000050_130 Hb_006683_010 Hb_006683_010 Hb_000050_130--Hb_006683_010 Hb_001652_110 Hb_001652_110 Hb_000050_130--Hb_001652_110 Hb_002675_120 Hb_002675_120 Hb_000050_130--Hb_002675_120 Hb_008779_010 Hb_008779_010 Hb_000050_130--Hb_008779_010 Hb_008643_010 Hb_008643_010 Hb_000050_130--Hb_008643_010 Hb_054362_010 Hb_054362_010 Hb_000050_130--Hb_054362_010 Hb_006683_010--Hb_002675_120 Hb_006683_010--Hb_001652_110 Hb_006683_010--Hb_008779_010 Hb_006683_010--Hb_008643_010 Hb_000160_100 Hb_000160_100 Hb_006683_010--Hb_000160_100 Hb_000065_050 Hb_000065_050 Hb_001652_110--Hb_000065_050 Hb_000574_550 Hb_000574_550 Hb_001652_110--Hb_000574_550 Hb_005007_040 Hb_005007_040 Hb_001652_110--Hb_005007_040 Hb_012071_010 Hb_012071_010 Hb_001652_110--Hb_012071_010 Hb_012295_020 Hb_012295_020 Hb_001652_110--Hb_012295_020 Hb_002675_120--Hb_000160_100 Hb_002675_120--Hb_001652_110 Hb_006683_030 Hb_006683_030 Hb_002675_120--Hb_006683_030 Hb_002849_150 Hb_002849_150 Hb_002675_120--Hb_002849_150 Hb_008779_010--Hb_008643_010 Hb_001638_220 Hb_001638_220 Hb_008779_010--Hb_001638_220 Hb_008779_010--Hb_054362_010 Hb_000455_100 Hb_000455_100 Hb_008779_010--Hb_000455_100 Hb_127993_010 Hb_127993_010 Hb_008779_010--Hb_127993_010 Hb_008643_010--Hb_001638_220 Hb_008643_010--Hb_054362_010 Hb_008643_010--Hb_000455_100 Hb_008643_010--Hb_127993_010 Hb_054362_010--Hb_127993_010 Hb_169574_010 Hb_169574_010 Hb_054362_010--Hb_169574_010 Hb_048874_010 Hb_048874_010 Hb_054362_010--Hb_048874_010 Hb_005799_040 Hb_005799_040 Hb_054362_010--Hb_005799_040 Hb_008246_050 Hb_008246_050 Hb_054362_010--Hb_008246_050 Hb_162126_010 Hb_162126_010 Hb_054362_010--Hb_162126_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0356658 0 0 0 0.00959272 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.347257 0.605326 0.0773952

CAGE analysis