Hb_000050_180

Information

Type -
Description -
Location Contig50: 370456-374157
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000050_180 0.0 - - -
2 Hb_012572_020 0.3105872808 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_077935_010 0.3130698487 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_011986_010 0.3282979597 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_003005_040 0.3315595018 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_006132_030 0.3385736853 - - hypothetical protein CARUB_v10012126mg, partial [Capsella rubella]
7 Hb_011484_010 0.3396301119 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_001114_040 0.3607467861 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
9 Hb_009150_030 0.3627685668 - - hypothetical protein POPTR_0010s14920g [Populus trichocarpa]
10 Hb_115376_010 0.366416815 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
11 Hb_014568_020 0.3667153936 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
12 Hb_000399_010 0.3730362894 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
13 Hb_001229_020 0.3773647277 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
14 Hb_000608_460 0.37777819 - - -
15 Hb_021888_070 0.3823229943 - - Putative CCR4-associated factor 1 like 11 [Glycine soja]
16 Hb_001062_020 0.3839889339 - - PREDICTED: uncharacterized protein LOC103962405 [Pyrus x bretschneideri]
17 Hb_001214_180 0.3846322317 - - -
18 Hb_181240_010 0.3853101963 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
19 Hb_007790_040 0.3861740495 - - PREDICTED: uncharacterized protein LOC104417177 [Eucalyptus grandis]
20 Hb_000915_030 0.3883210851 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]

Gene co-expression network

sample Hb_000050_180 Hb_000050_180 Hb_012572_020 Hb_012572_020 Hb_000050_180--Hb_012572_020 Hb_077935_010 Hb_077935_010 Hb_000050_180--Hb_077935_010 Hb_011986_010 Hb_011986_010 Hb_000050_180--Hb_011986_010 Hb_003005_040 Hb_003005_040 Hb_000050_180--Hb_003005_040 Hb_006132_030 Hb_006132_030 Hb_000050_180--Hb_006132_030 Hb_011484_010 Hb_011484_010 Hb_000050_180--Hb_011484_010 Hb_016482_010 Hb_016482_010 Hb_012572_020--Hb_016482_010 Hb_000103_350 Hb_000103_350 Hb_012572_020--Hb_000103_350 Hb_159036_010 Hb_159036_010 Hb_012572_020--Hb_159036_010 Hb_039262_010 Hb_039262_010 Hb_012572_020--Hb_039262_010 Hb_012572_020--Hb_011986_010 Hb_000853_410 Hb_000853_410 Hb_012572_020--Hb_000853_410 Hb_077935_010--Hb_011986_010 Hb_077935_010--Hb_003005_040 Hb_000460_070 Hb_000460_070 Hb_077935_010--Hb_000460_070 Hb_007054_050 Hb_007054_050 Hb_077935_010--Hb_007054_050 Hb_001229_020 Hb_001229_020 Hb_077935_010--Hb_001229_020 Hb_008326_010 Hb_008326_010 Hb_077935_010--Hb_008326_010 Hb_001114_040 Hb_001114_040 Hb_011986_010--Hb_001114_040 Hb_011986_010--Hb_007054_050 Hb_009150_030 Hb_009150_030 Hb_011986_010--Hb_009150_030 Hb_000122_210 Hb_000122_210 Hb_011986_010--Hb_000122_210 Hb_063405_020 Hb_063405_020 Hb_011986_010--Hb_063405_020 Hb_181240_010 Hb_181240_010 Hb_003005_040--Hb_181240_010 Hb_004324_080 Hb_004324_080 Hb_003005_040--Hb_004324_080 Hb_003005_040--Hb_006132_030 Hb_004734_050 Hb_004734_050 Hb_003005_040--Hb_004734_050 Hb_003005_040--Hb_001229_020 Hb_043708_010 Hb_043708_010 Hb_003005_040--Hb_043708_010 Hb_005344_030 Hb_005344_030 Hb_006132_030--Hb_005344_030 Hb_006132_030--Hb_011484_010 Hb_000154_010 Hb_000154_010 Hb_006132_030--Hb_000154_010 Hb_133820_010 Hb_133820_010 Hb_006132_030--Hb_133820_010 Hb_000702_080 Hb_000702_080 Hb_006132_030--Hb_000702_080 Hb_000052_020 Hb_000052_020 Hb_006132_030--Hb_000052_020 Hb_000399_010 Hb_000399_010 Hb_011484_010--Hb_000399_010 Hb_020334_010 Hb_020334_010 Hb_011484_010--Hb_020334_010 Hb_026239_010 Hb_026239_010 Hb_011484_010--Hb_026239_010 Hb_011484_010--Hb_000853_410 Hb_061802_010 Hb_061802_010 Hb_011484_010--Hb_061802_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0534734 0 0 0.0119892 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0272363 0.0428577 0.0808653 0 0.0900793

CAGE analysis