Hb_000051_050

Information

Type -
Description -
Location Contig51: 59761-62753
Sequence    

Annotation

kegg
ID rcu:RCOM_0768880
description cation efflux protein/ zinc transporter, putative
nr
ID XP_002531641.1
description cation efflux protein/ zinc transporter, putative [Ricinus communis]
swissprot
ID Q10PP8
description Metal tolerance protein 4 OS=Oryza sativa subsp. japonica GN=MTP4 PE=2 SV=1
trembl
ID B9T072
description Cation efflux protein/ zinc transporter, putative OS=Ricinus communis GN=RCOM_0768880 PE=4 SV=1
Gene Ontology
ID GO:0016021
description metal tolerance protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46246: 60252-62828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000051_050 0.0 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
2 Hb_178051_070 0.1221241429 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
3 Hb_030736_070 0.1273849317 - - PREDICTED: general transcription factor IIH subunit 3 isoform X2 [Jatropha curcas]
4 Hb_000009_330 0.1345129445 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
5 Hb_000169_170 0.1349509448 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
6 Hb_000237_190 0.1367254744 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X1 [Jatropha curcas]
7 Hb_003666_020 0.141541957 - - kinase, putative [Ricinus communis]
8 Hb_033312_150 0.1421989708 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
9 Hb_000700_060 0.1441546526 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
10 Hb_002284_170 0.1477606706 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
11 Hb_003906_180 0.1483630983 - - unknown [Zea mays]
12 Hb_008948_140 0.1485472097 - - PREDICTED: nuclear pore complex protein NUP205 [Jatropha curcas]
13 Hb_022250_150 0.1486940959 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
14 Hb_000862_040 0.153654351 - - ara4-interacting protein, putative [Ricinus communis]
15 Hb_010712_090 0.1543471679 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
16 Hb_000139_320 0.1555456092 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
17 Hb_056987_010 0.1562959125 - - DNA-damage-repair/toleration protein DRT111, chloroplastic [Glycine soja]
18 Hb_001277_360 0.1563943201 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
19 Hb_000123_330 0.1568666381 - - hypothetical protein M569_14136, partial [Genlisea aurea]
20 Hb_000059_020 0.1570197353 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]

Gene co-expression network

sample Hb_000051_050 Hb_000051_050 Hb_178051_070 Hb_178051_070 Hb_000051_050--Hb_178051_070 Hb_030736_070 Hb_030736_070 Hb_000051_050--Hb_030736_070 Hb_000009_330 Hb_000009_330 Hb_000051_050--Hb_000009_330 Hb_000169_170 Hb_000169_170 Hb_000051_050--Hb_000169_170 Hb_000237_190 Hb_000237_190 Hb_000051_050--Hb_000237_190 Hb_003666_020 Hb_003666_020 Hb_000051_050--Hb_003666_020 Hb_000700_060 Hb_000700_060 Hb_178051_070--Hb_000700_060 Hb_023226_080 Hb_023226_080 Hb_178051_070--Hb_023226_080 Hb_004032_040 Hb_004032_040 Hb_178051_070--Hb_004032_040 Hb_178051_070--Hb_000169_170 Hb_002284_170 Hb_002284_170 Hb_178051_070--Hb_002284_170 Hb_010712_090 Hb_010712_090 Hb_178051_070--Hb_010712_090 Hb_027760_070 Hb_027760_070 Hb_030736_070--Hb_027760_070 Hb_146081_010 Hb_146081_010 Hb_030736_070--Hb_146081_010 Hb_008143_070 Hb_008143_070 Hb_030736_070--Hb_008143_070 Hb_001033_050 Hb_001033_050 Hb_030736_070--Hb_001033_050 Hb_000457_140 Hb_000457_140 Hb_030736_070--Hb_000457_140 Hb_030736_070--Hb_000237_190 Hb_000059_020 Hb_000059_020 Hb_000009_330--Hb_000059_020 Hb_004994_090 Hb_004994_090 Hb_000009_330--Hb_004994_090 Hb_000009_330--Hb_000169_170 Hb_000862_040 Hb_000862_040 Hb_000009_330--Hb_000862_040 Hb_000236_410 Hb_000236_410 Hb_000009_330--Hb_000236_410 Hb_007054_040 Hb_007054_040 Hb_000009_330--Hb_007054_040 Hb_000169_170--Hb_007054_040 Hb_001541_250 Hb_001541_250 Hb_000169_170--Hb_001541_250 Hb_127599_010 Hb_127599_010 Hb_000169_170--Hb_127599_010 Hb_000169_170--Hb_000862_040 Hb_001862_110 Hb_001862_110 Hb_000169_170--Hb_001862_110 Hb_000130_020 Hb_000130_020 Hb_000237_190--Hb_000130_020 Hb_025194_020 Hb_025194_020 Hb_000237_190--Hb_025194_020 Hb_002259_080 Hb_002259_080 Hb_000237_190--Hb_002259_080 Hb_000365_030 Hb_000365_030 Hb_000237_190--Hb_000365_030 Hb_178968_050 Hb_178968_050 Hb_000237_190--Hb_178968_050 Hb_004553_030 Hb_004553_030 Hb_003666_020--Hb_004553_030 Hb_000928_220 Hb_000928_220 Hb_003666_020--Hb_000928_220 Hb_000402_080 Hb_000402_080 Hb_003666_020--Hb_000402_080 Hb_001258_020 Hb_001258_020 Hb_003666_020--Hb_001258_020 Hb_008103_060 Hb_008103_060 Hb_003666_020--Hb_008103_060 Hb_001205_200 Hb_001205_200 Hb_003666_020--Hb_001205_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.97183 19.5489 7.98073 14.0426 15.0528 6.61143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.65731 5.95726 3.76012 13.7894 2.50834

CAGE analysis