Hb_000051_060

Information

Type -
Description -
Location Contig51: 69623-74901
Sequence    

Annotation

kegg
ID rcu:RCOM_0768760
description hypothetical protein
nr
ID XP_002531639.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T070
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0768760 PE=4 SV=1
Gene Ontology
ID GO:0009535
description protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46253: 69655-74898
cDNA
(Sanger)
(ID:Location)		 036_H20.ab1: 69872-74868 , 036_K23.ab1: 69890-74898 , 047_A17.ab1: 69874-74868

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000051_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001935_100 0.067841861 - - structural molecule, putative [Ricinus communis]
3 Hb_005162_110 0.0742046269 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
4 Hb_003752_070 0.0799928377 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
5 Hb_021650_010 0.0806011962 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
6 Hb_002876_220 0.0914610298 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
7 Hb_001232_150 0.0927082369 - - PREDICTED: MAR-binding filament-like protein 1-1 [Jatropha curcas]
8 Hb_001195_270 0.0953054509 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
9 Hb_005731_110 0.0955913973 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
10 Hb_029351_010 0.0956772424 - - PREDICTED: HD domain-containing protein 2 isoform X1 [Jatropha curcas]
11 Hb_002874_180 0.0970021434 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
12 Hb_001195_460 0.0972732755 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]
13 Hb_000640_160 0.0989841011 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
14 Hb_003029_070 0.0993156506 - - PREDICTED: beta-carotene isomerase D27, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_001541_050 0.1011416556 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]
16 Hb_000003_170 0.1019160767 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
17 Hb_000003_780 0.1023586605 - - hexokinase [Manihot esculenta]
18 Hb_005946_040 0.103132502 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
19 Hb_001675_300 0.1040987072 - - PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Jatropha curcas]
20 Hb_000227_170 0.1049746545 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000051_060 Hb_000051_060 Hb_001935_100 Hb_001935_100 Hb_000051_060--Hb_001935_100 Hb_005162_110 Hb_005162_110 Hb_000051_060--Hb_005162_110 Hb_003752_070 Hb_003752_070 Hb_000051_060--Hb_003752_070 Hb_021650_010 Hb_021650_010 Hb_000051_060--Hb_021650_010 Hb_002876_220 Hb_002876_220 Hb_000051_060--Hb_002876_220 Hb_001232_150 Hb_001232_150 Hb_000051_060--Hb_001232_150 Hb_000227_170 Hb_000227_170 Hb_001935_100--Hb_000227_170 Hb_005539_010 Hb_005539_010 Hb_001935_100--Hb_005539_010 Hb_001410_070 Hb_001410_070 Hb_001935_100--Hb_001410_070 Hb_000796_160 Hb_000796_160 Hb_001935_100--Hb_000796_160 Hb_005946_040 Hb_005946_040 Hb_001935_100--Hb_005946_040 Hb_005162_110--Hb_005946_040 Hb_005162_110--Hb_021650_010 Hb_000003_170 Hb_000003_170 Hb_005162_110--Hb_000003_170 Hb_005731_110 Hb_005731_110 Hb_005162_110--Hb_005731_110 Hb_005162_110--Hb_003752_070 Hb_003752_070--Hb_021650_010 Hb_001195_270 Hb_001195_270 Hb_003752_070--Hb_001195_270 Hb_006787_090 Hb_006787_090 Hb_003752_070--Hb_006787_090 Hb_010174_090 Hb_010174_090 Hb_003752_070--Hb_010174_090 Hb_021650_010--Hb_001232_150 Hb_000802_130 Hb_000802_130 Hb_021650_010--Hb_000802_130 Hb_021650_010--Hb_001195_270 Hb_003029_070 Hb_003029_070 Hb_002876_220--Hb_003029_070 Hb_000300_180 Hb_000300_180 Hb_002876_220--Hb_000300_180 Hb_012022_150 Hb_012022_150 Hb_002876_220--Hb_012022_150 Hb_007002_020 Hb_007002_020 Hb_002876_220--Hb_007002_020 Hb_002876_220--Hb_001935_100 Hb_000445_070 Hb_000445_070 Hb_001232_150--Hb_000445_070 Hb_000640_160 Hb_000640_160 Hb_001232_150--Hb_000640_160 Hb_003225_020 Hb_003225_020 Hb_001232_150--Hb_003225_020 Hb_001232_150--Hb_005731_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.737 9.68299 43.3211 14.3466 16.5949 19.3848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.953 21.7748 10.6382 7.6455 32.042

CAGE analysis