Hb_000051_070

Information

Type -
Description -
Location Contig51: 79685-90137
Sequence    

Annotation

kegg
ID pop:POPTR_0001s04710g
description POPTRDRAFT_839996; hypothetical protein
nr
ID XP_012093319.1
description PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
swissprot
ID Q6QNM1
description Casein kinase I OS=Toxoplasma gondii PE=2 SV=1
trembl
ID A0A067L797
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19188 PE=3 SV=1
Gene Ontology
ID GO:0004674
description kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46254: 79713-90030
cDNA
(Sanger)
(ID:Location)		 035_N02.ab1: 86378-89644

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000051_070 0.0 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
2 Hb_001006_140 0.0584004013 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
3 Hb_000152_380 0.0640850533 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
4 Hb_000815_210 0.0658243457 - - uncoupling protein 3, partial [Manihot esculenta]
5 Hb_005276_210 0.0658670597 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
6 Hb_001369_420 0.0692097396 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
7 Hb_003952_070 0.0705760565 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_023344_030 0.0714915452 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
9 Hb_004724_200 0.0724808187 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
10 Hb_000085_160 0.073661841 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
11 Hb_001301_200 0.0737957276 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
12 Hb_000300_060 0.0748861673 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
13 Hb_000879_200 0.0757741149 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
14 Hb_002518_280 0.0758562841 - - phosphate transporter [Manihot esculenta]
15 Hb_000676_110 0.0766640059 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
16 Hb_054865_100 0.077046969 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
17 Hb_000538_100 0.0772317184 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003406_010 0.0775988841 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
19 Hb_000193_190 0.0781699436 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
20 Hb_000933_090 0.0781774937 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]

Gene co-expression network

sample Hb_000051_070 Hb_000051_070 Hb_001006_140 Hb_001006_140 Hb_000051_070--Hb_001006_140 Hb_000152_380 Hb_000152_380 Hb_000051_070--Hb_000152_380 Hb_000815_210 Hb_000815_210 Hb_000051_070--Hb_000815_210 Hb_005276_210 Hb_005276_210 Hb_000051_070--Hb_005276_210 Hb_001369_420 Hb_001369_420 Hb_000051_070--Hb_001369_420 Hb_003952_070 Hb_003952_070 Hb_000051_070--Hb_003952_070 Hb_000038_170 Hb_000038_170 Hb_001006_140--Hb_000038_170 Hb_001199_020 Hb_001199_020 Hb_001006_140--Hb_001199_020 Hb_000120_790 Hb_000120_790 Hb_001006_140--Hb_000120_790 Hb_001006_140--Hb_003952_070 Hb_002518_280 Hb_002518_280 Hb_001006_140--Hb_002518_280 Hb_000152_380--Hb_002518_280 Hb_004310_150 Hb_004310_150 Hb_000152_380--Hb_004310_150 Hb_000780_230 Hb_000780_230 Hb_000152_380--Hb_000780_230 Hb_010618_010 Hb_010618_010 Hb_000152_380--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_000152_380--Hb_001248_060 Hb_004221_020 Hb_004221_020 Hb_000152_380--Hb_004221_020 Hb_000538_200 Hb_000538_200 Hb_000815_210--Hb_000538_200 Hb_003406_010 Hb_003406_010 Hb_000815_210--Hb_003406_010 Hb_004600_040 Hb_004600_040 Hb_000815_210--Hb_004600_040 Hb_011673_030 Hb_011673_030 Hb_000815_210--Hb_011673_030 Hb_000608_030 Hb_000608_030 Hb_000815_210--Hb_000608_030 Hb_000034_100 Hb_000034_100 Hb_005276_210--Hb_000034_100 Hb_054865_100 Hb_054865_100 Hb_005276_210--Hb_054865_100 Hb_000300_060 Hb_000300_060 Hb_005276_210--Hb_000300_060 Hb_002477_280 Hb_002477_280 Hb_005276_210--Hb_002477_280 Hb_066182_010 Hb_066182_010 Hb_005276_210--Hb_066182_010 Hb_005276_210--Hb_003952_070 Hb_000025_140 Hb_000025_140 Hb_001369_420--Hb_000025_140 Hb_000676_110 Hb_000676_110 Hb_001369_420--Hb_000676_110 Hb_008695_180 Hb_008695_180 Hb_001369_420--Hb_008695_180 Hb_000358_150 Hb_000358_150 Hb_001369_420--Hb_000358_150 Hb_001493_030 Hb_001493_030 Hb_001369_420--Hb_001493_030 Hb_004881_020 Hb_004881_020 Hb_003952_070--Hb_004881_020 Hb_006252_040 Hb_006252_040 Hb_003952_070--Hb_006252_040 Hb_007594_130 Hb_007594_130 Hb_003952_070--Hb_007594_130 Hb_000538_100 Hb_000538_100 Hb_003952_070--Hb_000538_100 Hb_001489_150 Hb_001489_150 Hb_003952_070--Hb_001489_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.6326 35.4262 20.9974 30.831 76.1626 63.2595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.2024 46.5511 47.3328 30.8666 30.742

CAGE analysis