Hb_000051_110

Information

Type -
Description -
Location Contig51: 192764-194790
Sequence    

Annotation

kegg
ID rcu:RCOM_1299400
description hypothetical protein
nr
ID XP_002519384.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S065
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1299400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46256: 192871-194771
cDNA
(Sanger)
(ID:Location)		 036_I23.ab1: 193883-194771

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000051_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008066_010 0.0857493078 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]
3 Hb_001604_010 0.0859583724 - - 14-3-3 protein, putative [Ricinus communis]
4 Hb_000221_270 0.102105407 - - hypothetical protein JCGZ_15813 [Jatropha curcas]
5 Hb_009111_050 0.1033767456 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
6 Hb_000069_460 0.1036800241 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 31-like [Jatropha curcas]
7 Hb_000190_140 0.1046520322 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
8 Hb_010710_030 0.1049969714 transcription factor TF Family: G2-like PREDICTED: transcription factor LUX [Jatropha curcas]
9 Hb_004046_010 0.1067127747 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
10 Hb_015306_020 0.1073642079 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
11 Hb_143629_040 0.1083682211 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000661_170 0.1093308492 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
13 Hb_000062_240 0.1117540421 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
14 Hb_015001_020 0.1123868833 - - PREDICTED: la-related protein 6B [Jatropha curcas]
15 Hb_001500_040 0.1124645038 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
16 Hb_012022_030 0.1133028196 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
17 Hb_003728_030 0.1135991432 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
18 Hb_001269_550 0.1136736837 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
19 Hb_005062_070 0.1138568701 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
20 Hb_001671_080 0.1141865417 - - amino acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000051_110 Hb_000051_110 Hb_008066_010 Hb_008066_010 Hb_000051_110--Hb_008066_010 Hb_001604_010 Hb_001604_010 Hb_000051_110--Hb_001604_010 Hb_000221_270 Hb_000221_270 Hb_000051_110--Hb_000221_270 Hb_009111_050 Hb_009111_050 Hb_000051_110--Hb_009111_050 Hb_000069_460 Hb_000069_460 Hb_000051_110--Hb_000069_460 Hb_000190_140 Hb_000190_140 Hb_000051_110--Hb_000190_140 Hb_000110_160 Hb_000110_160 Hb_008066_010--Hb_000110_160 Hb_001329_300 Hb_001329_300 Hb_008066_010--Hb_001329_300 Hb_008066_010--Hb_000069_460 Hb_010710_030 Hb_010710_030 Hb_008066_010--Hb_010710_030 Hb_008066_010--Hb_000221_270 Hb_000567_260 Hb_000567_260 Hb_008066_010--Hb_000567_260 Hb_007441_120 Hb_007441_120 Hb_001604_010--Hb_007441_120 Hb_015746_010 Hb_015746_010 Hb_001604_010--Hb_015746_010 Hb_028872_140 Hb_028872_140 Hb_001604_010--Hb_028872_140 Hb_001248_130 Hb_001248_130 Hb_001604_010--Hb_001248_130 Hb_000120_950 Hb_000120_950 Hb_001604_010--Hb_000120_950 Hb_001584_330 Hb_001584_330 Hb_001604_010--Hb_001584_330 Hb_000221_270--Hb_000069_460 Hb_005548_010 Hb_005548_010 Hb_000221_270--Hb_005548_010 Hb_002902_110 Hb_002902_110 Hb_000221_270--Hb_002902_110 Hb_000221_270--Hb_010710_030 Hb_009111_050--Hb_028872_140 Hb_033642_010 Hb_033642_010 Hb_009111_050--Hb_033642_010 Hb_001030_120 Hb_001030_120 Hb_009111_050--Hb_001030_120 Hb_001454_210 Hb_001454_210 Hb_009111_050--Hb_001454_210 Hb_009111_050--Hb_000190_140 Hb_015306_020 Hb_015306_020 Hb_009111_050--Hb_015306_020 Hb_000069_460--Hb_000110_160 Hb_000069_460--Hb_001329_300 Hb_000446_090 Hb_000446_090 Hb_000069_460--Hb_000446_090 Hb_000754_060 Hb_000754_060 Hb_000190_140--Hb_000754_060 Hb_000190_140--Hb_000120_950 Hb_000190_140--Hb_001454_210 Hb_005062_070 Hb_005062_070 Hb_000190_140--Hb_005062_070 Hb_000190_140--Hb_015306_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1735 8.08855 4.47727 3.46362 15.1619 25.2107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.8185 12.5602 27.1011 17.5031 5.52121

CAGE analysis