Hb_000051_130

Information

Type -
Description -
Location Contig51: 285812-308353
Sequence    

Annotation

kegg
ID rcu:RCOM_1299070
description Serine/threonine-protein kinase PBS1, putative (EC:2.7.11.25 1.3.1.74)
nr
ID XP_002519381.1
description Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
swissprot
ID C0LGU1
description Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1
trembl
ID B9S062
description Serine/threonine-protein kinase PBS1, putative OS=Ricinus communis GN=RCOM_1299070 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable leucine-rich repeat receptor-like protein kinase at5g49770

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46257: 285850-308356 , PASA_asmbl_46258: 286079-298328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000051_130 0.0 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
2 Hb_000120_260 0.0614143559 - - PREDICTED: ABC transporter G family member 11 [Jatropha curcas]
3 Hb_000187_020 0.0773803985 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
4 Hb_010737_030 0.0776854856 - - unnamed protein product [Vitis vinifera]
5 Hb_000496_100 0.0776890507 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
6 Hb_018663_010 0.0817418201 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
7 Hb_059832_010 0.0852820344 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]
8 Hb_000028_010 0.0872384011 - - cytochrome P450, putative [Ricinus communis]
9 Hb_000130_400 0.0875384437 transcription factor TF Family: bZIP hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
10 Hb_028486_020 0.0883877159 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000375_200 0.0923643871 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
12 Hb_000445_320 0.0941198012 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
13 Hb_000436_110 0.0978508687 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
14 Hb_000193_170 0.0999038153 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
15 Hb_102900_010 0.1024462391 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]
16 Hb_008165_010 0.1049152276 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
17 Hb_001221_550 0.1147468464 - - Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]
18 Hb_004003_020 0.1163995371 - - unnamed protein product [Coffea canephora]
19 Hb_061336_010 0.1170718548 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000010_320 0.1174181194 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000051_130 Hb_000051_130 Hb_000120_260 Hb_000120_260 Hb_000051_130--Hb_000120_260 Hb_000187_020 Hb_000187_020 Hb_000051_130--Hb_000187_020 Hb_010737_030 Hb_010737_030 Hb_000051_130--Hb_010737_030 Hb_000496_100 Hb_000496_100 Hb_000051_130--Hb_000496_100 Hb_018663_010 Hb_018663_010 Hb_000051_130--Hb_018663_010 Hb_059832_010 Hb_059832_010 Hb_000051_130--Hb_059832_010 Hb_000120_260--Hb_000187_020 Hb_000120_260--Hb_010737_030 Hb_000120_260--Hb_018663_010 Hb_000436_110 Hb_000436_110 Hb_000120_260--Hb_000436_110 Hb_000120_260--Hb_000496_100 Hb_000445_320 Hb_000445_320 Hb_000187_020--Hb_000445_320 Hb_000375_200 Hb_000375_200 Hb_000187_020--Hb_000375_200 Hb_000187_020--Hb_059832_010 Hb_000193_170 Hb_000193_170 Hb_000187_020--Hb_000193_170 Hb_000130_400 Hb_000130_400 Hb_000187_020--Hb_000130_400 Hb_010737_030--Hb_000496_100 Hb_010737_030--Hb_018663_010 Hb_102900_010 Hb_102900_010 Hb_010737_030--Hb_102900_010 Hb_010737_030--Hb_000436_110 Hb_008165_010 Hb_008165_010 Hb_010737_030--Hb_008165_010 Hb_010737_030--Hb_000375_200 Hb_028486_020 Hb_028486_020 Hb_000496_100--Hb_028486_020 Hb_000496_100--Hb_018663_010 Hb_000496_100--Hb_102900_010 Hb_000496_100--Hb_000130_400 Hb_000496_100--Hb_008165_010 Hb_018663_010--Hb_008165_010 Hb_018663_010--Hb_000375_200 Hb_018663_010--Hb_000436_110 Hb_018663_010--Hb_102900_010 Hb_059832_010--Hb_000130_400 Hb_000010_320 Hb_000010_320 Hb_059832_010--Hb_000010_320 Hb_059832_010--Hb_000375_200 Hb_158845_010 Hb_158845_010 Hb_059832_010--Hb_158845_010 Hb_059832_010--Hb_000445_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0275445 0.0344768 13.6545 3.76786 0.0123238 0.0221408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0279177 0.0659079 0.0210253 0.0174236 2.2045

CAGE analysis