Hb_000052_010

Information

Type -
Description -
Location Contig52: 32276-54212
Sequence    

Annotation

kegg
ID smo:SELMODRAFT_419484
description hypothetical protein
nr
ID EPS66360.1
description hypothetical protein M569_08416, partial [Genlisea aurea]
swissprot
ID -
description -
trembl
ID I1IVV0
description Uncharacterized protein OS=Brachypodium distachyon GN=BRADI5G02010 PE=4 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46666: 37384-53658 , PASA_asmbl_46667: 37405-53378 , PASA_asmbl_46668: 37405-74229 , PASA_asmbl_46669: 45495-53658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000052_010 0.0 - - hypothetical protein M569_08416, partial [Genlisea aurea]
2 Hb_000184_180 0.0817584832 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
3 Hb_000526_020 0.1017541951 - - thioredoxin-like family protein [Hevea brasiliensis]
4 Hb_003777_230 0.1050888824 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
5 Hb_006816_440 0.1059068743 - - protein phosphatase 2c, putative [Ricinus communis]
6 Hb_149683_010 0.1077203845 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
7 Hb_004055_060 0.1087627845 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
8 Hb_003023_050 0.1157750342 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
9 Hb_001266_050 0.1175149458 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like isoform X2 [Elaeis guineensis]
10 Hb_010166_020 0.1194932136 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
11 Hb_000005_030 0.1212852102 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
12 Hb_001279_250 0.1225053641 - - PREDICTED: pectate lyase-like [Jatropha curcas]
13 Hb_150299_030 0.1274154766 - - conserved hypothetical protein [Ricinus communis]
14 Hb_103752_010 0.1307829508 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
15 Hb_000861_050 0.1338060042 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
16 Hb_000580_160 0.1375836866 - - Nitrate transporter 1.5 [Morus notabilis]
17 Hb_001252_140 0.1389019782 - - catalytic, putative [Ricinus communis]
18 Hb_000444_030 0.1395337444 - - PREDICTED: expansin-A20 [Jatropha curcas]
19 Hb_007747_130 0.1399010038 - - PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]
20 Hb_006469_060 0.1400006395 - - hypothetical protein POPTR_0005s16470g [Populus trichocarpa]

Gene co-expression network

sample Hb_000052_010 Hb_000052_010 Hb_000184_180 Hb_000184_180 Hb_000052_010--Hb_000184_180 Hb_000526_020 Hb_000526_020 Hb_000052_010--Hb_000526_020 Hb_003777_230 Hb_003777_230 Hb_000052_010--Hb_003777_230 Hb_006816_440 Hb_006816_440 Hb_000052_010--Hb_006816_440 Hb_149683_010 Hb_149683_010 Hb_000052_010--Hb_149683_010 Hb_004055_060 Hb_004055_060 Hb_000052_010--Hb_004055_060 Hb_000184_180--Hb_006816_440 Hb_000444_030 Hb_000444_030 Hb_000184_180--Hb_000444_030 Hb_001741_080 Hb_001741_080 Hb_000184_180--Hb_001741_080 Hb_115919_020 Hb_115919_020 Hb_000184_180--Hb_115919_020 Hb_007747_130 Hb_007747_130 Hb_000184_180--Hb_007747_130 Hb_000062_580 Hb_000062_580 Hb_000526_020--Hb_000062_580 Hb_001266_050 Hb_001266_050 Hb_000526_020--Hb_001266_050 Hb_000005_030 Hb_000005_030 Hb_000526_020--Hb_000005_030 Hb_003038_180 Hb_003038_180 Hb_000526_020--Hb_003038_180 Hb_000526_020--Hb_000184_180 Hb_000603_210 Hb_000603_210 Hb_003777_230--Hb_000603_210 Hb_010166_020 Hb_010166_020 Hb_003777_230--Hb_010166_020 Hb_007741_040 Hb_007741_040 Hb_003777_230--Hb_007741_040 Hb_001007_050 Hb_001007_050 Hb_003777_230--Hb_001007_050 Hb_003777_230--Hb_004055_060 Hb_006816_440--Hb_149683_010 Hb_002235_230 Hb_002235_230 Hb_006816_440--Hb_002235_230 Hb_006816_440--Hb_000444_030 Hb_006816_440--Hb_001741_080 Hb_149683_010--Hb_002235_230 Hb_149683_010--Hb_000184_180 Hb_103752_010 Hb_103752_010 Hb_149683_010--Hb_103752_010 Hb_000300_400 Hb_000300_400 Hb_149683_010--Hb_000300_400 Hb_003023_050 Hb_003023_050 Hb_004055_060--Hb_003023_050 Hb_001279_250 Hb_001279_250 Hb_004055_060--Hb_001279_250 Hb_000580_160 Hb_000580_160 Hb_004055_060--Hb_000580_160 Hb_004055_060--Hb_010166_020 Hb_002492_020 Hb_002492_020 Hb_004055_060--Hb_002492_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.099 0.431171 0.224548 3.53017 20.9007 34.6022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
113.72 103.48 31.4241 2.68193 0.834757

CAGE analysis