Hb_000053_020

Information

Type -
Description -
Location Contig53: 42308-54396
Sequence    

Annotation

kegg
ID rcu:RCOM_1617450
description F-box and wd40 domain protein, putative (EC:2.7.11.7)
nr
ID XP_002511967.1
description F-box and wd40 domain protein, putative [Ricinus communis]
swissprot
ID Q8RXA7
description DENN domain and WD repeat-containing protein SCD1 OS=Arabidopsis thaliana GN=SCD1 PE=1 SV=1
trembl
ID B9RE28
description F-box and wd40 domain protein, putative OS=Ricinus communis GN=RCOM_1617450 PE=4 SV=1
Gene Ontology
ID GO:0005515
description stomatal cytokinesis-defective 1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47289: 42371-84520
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000053_020 0.0 - - F-box and wd40 domain protein, putative [Ricinus communis]
2 Hb_003768_030 0.06578208 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
3 Hb_008453_030 0.0713730513 - - Thioredoxin superfamily protein [Theobroma cacao]
4 Hb_001386_040 0.0726860192 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
5 Hb_006274_030 0.0743581029 - - F-box and wd40 domain protein, putative [Ricinus communis]
6 Hb_001189_070 0.079401103 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
7 Hb_001489_090 0.0798070964 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
8 Hb_000483_300 0.0818531178 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
9 Hb_001366_180 0.0822671756 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
10 Hb_031862_100 0.0826310656 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002014_030 0.0834888694 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
12 Hb_001489_080 0.084252981 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
13 Hb_000948_160 0.0845455539 - - PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Jatropha curcas]
14 Hb_006907_130 0.0851771795 - - unnamed protein product [Coffea canephora]
15 Hb_003678_020 0.0855420693 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006420_080 0.0867120062 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_007928_030 0.086767515 - - PREDICTED: dual specificity phosphatase Cdc25 [Jatropha curcas]
18 Hb_000289_110 0.0868045986 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
19 Hb_004934_100 0.0868400169 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002811_130 0.0869813842 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000053_020 Hb_000053_020 Hb_003768_030 Hb_003768_030 Hb_000053_020--Hb_003768_030 Hb_008453_030 Hb_008453_030 Hb_000053_020--Hb_008453_030 Hb_001386_040 Hb_001386_040 Hb_000053_020--Hb_001386_040 Hb_006274_030 Hb_006274_030 Hb_000053_020--Hb_006274_030 Hb_001189_070 Hb_001189_070 Hb_000053_020--Hb_001189_070 Hb_001489_090 Hb_001489_090 Hb_000053_020--Hb_001489_090 Hb_001195_200 Hb_001195_200 Hb_003768_030--Hb_001195_200 Hb_004324_270 Hb_004324_270 Hb_003768_030--Hb_004324_270 Hb_003768_030--Hb_008453_030 Hb_001489_080 Hb_001489_080 Hb_003768_030--Hb_001489_080 Hb_012423_030 Hb_012423_030 Hb_003768_030--Hb_012423_030 Hb_004934_100 Hb_004934_100 Hb_008453_030--Hb_004934_100 Hb_000421_220 Hb_000421_220 Hb_008453_030--Hb_000421_220 Hb_000107_160 Hb_000107_160 Hb_008453_030--Hb_000107_160 Hb_000061_210 Hb_000061_210 Hb_008453_030--Hb_000061_210 Hb_000373_070 Hb_000373_070 Hb_008453_030--Hb_000373_070 Hb_000081_160 Hb_000081_160 Hb_008453_030--Hb_000081_160 Hb_031862_100 Hb_031862_100 Hb_001386_040--Hb_031862_100 Hb_000948_160 Hb_000948_160 Hb_001386_040--Hb_000948_160 Hb_002183_060 Hb_002183_060 Hb_001386_040--Hb_002183_060 Hb_007928_030 Hb_007928_030 Hb_001386_040--Hb_007928_030 Hb_000465_390 Hb_000465_390 Hb_001386_040--Hb_000465_390 Hb_001366_180 Hb_001366_180 Hb_006274_030--Hb_001366_180 Hb_000479_250 Hb_000479_250 Hb_006274_030--Hb_000479_250 Hb_001971_010 Hb_001971_010 Hb_006274_030--Hb_001971_010 Hb_006478_020 Hb_006478_020 Hb_006274_030--Hb_006478_020 Hb_002014_030 Hb_002014_030 Hb_006274_030--Hb_002014_030 Hb_008841_020 Hb_008841_020 Hb_001189_070--Hb_008841_020 Hb_000310_090 Hb_000310_090 Hb_001189_070--Hb_000310_090 Hb_000347_240 Hb_000347_240 Hb_001189_070--Hb_000347_240 Hb_001189_070--Hb_031862_100 Hb_011344_120 Hb_011344_120 Hb_001189_070--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_001189_070--Hb_001314_050 Hb_003465_030 Hb_003465_030 Hb_001489_090--Hb_003465_030 Hb_001489_090--Hb_000347_240 Hb_001489_090--Hb_001195_200 Hb_001489_090--Hb_000948_160 Hb_001489_090--Hb_008453_030 Hb_004586_420 Hb_004586_420 Hb_001489_090--Hb_004586_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.13473 4.18505 5.96282 7.65918 4.61444 6.52542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4762 12.5986 7.89425 9.26886 10.4063

CAGE analysis