Hb_000053_030

Information

Type -
Description -
Location Contig53: 60090-60559
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_899088
description hypothetical protein
nr
ID KDO41983.1
description hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DGI8
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0010393mg PE=4 SV=1
Gene Ontology
ID GO:0080008
description stomatal cytokinesis-defective 1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47289: 42371-84520
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000053_030 0.0 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
2 Hb_004466_060 0.113121856 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
3 Hb_013358_090 0.1292330041 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
4 Hb_002192_090 0.1327944736 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
5 Hb_088163_010 0.1416172241 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
6 Hb_106415_010 0.1442368944 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
7 Hb_099878_050 0.1448892272 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
8 Hb_000825_030 0.1499830196 - - zinc binding dehydrogenase, putative [Ricinus communis]
9 Hb_001518_070 0.1505330096 - - conserved hypothetical protein [Ricinus communis]
10 Hb_068569_010 0.1535777526 - - -
11 Hb_000004_010 0.1551897361 - - hypothetical protein Csa_6G120400 [Cucumis sativus]
12 Hb_010964_020 0.1552590019 - - RNA helicase [Arabidopsis thaliana]
13 Hb_100137_010 0.1581131765 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
14 Hb_183522_010 0.1585600851 - - Far upstream element-binding protein, putative [Ricinus communis]
15 Hb_075764_010 0.1643216165 - - PREDICTED: PRA1 family protein A1-like [Jatropha curcas]
16 Hb_009083_030 0.1667392422 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
17 Hb_000074_060 0.1681010312 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
18 Hb_133724_010 0.1694901746 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002611_030 0.1695580956 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
20 Hb_182713_020 0.1712619302 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]

Gene co-expression network

sample Hb_000053_030 Hb_000053_030 Hb_004466_060 Hb_004466_060 Hb_000053_030--Hb_004466_060 Hb_013358_090 Hb_013358_090 Hb_000053_030--Hb_013358_090 Hb_002192_090 Hb_002192_090 Hb_000053_030--Hb_002192_090 Hb_088163_010 Hb_088163_010 Hb_000053_030--Hb_088163_010 Hb_106415_010 Hb_106415_010 Hb_000053_030--Hb_106415_010 Hb_099878_050 Hb_099878_050 Hb_000053_030--Hb_099878_050 Hb_100137_010 Hb_100137_010 Hb_004466_060--Hb_100137_010 Hb_000168_010 Hb_000168_010 Hb_004466_060--Hb_000168_010 Hb_089202_010 Hb_089202_010 Hb_004466_060--Hb_089202_010 Hb_002611_030 Hb_002611_030 Hb_004466_060--Hb_002611_030 Hb_002562_110 Hb_002562_110 Hb_004466_060--Hb_002562_110 Hb_181328_010 Hb_181328_010 Hb_013358_090--Hb_181328_010 Hb_013358_080 Hb_013358_080 Hb_013358_090--Hb_013358_080 Hb_013358_090--Hb_099878_050 Hb_002027_180 Hb_002027_180 Hb_013358_090--Hb_002027_180 Hb_004040_030 Hb_004040_030 Hb_013358_090--Hb_004040_030 Hb_133724_010 Hb_133724_010 Hb_002192_090--Hb_133724_010 Hb_001518_070 Hb_001518_070 Hb_002192_090--Hb_001518_070 Hb_002388_010 Hb_002388_010 Hb_002192_090--Hb_002388_010 Hb_001747_030 Hb_001747_030 Hb_002192_090--Hb_001747_030 Hb_002192_090--Hb_099878_050 Hb_075764_010 Hb_075764_010 Hb_088163_010--Hb_075764_010 Hb_001767_130 Hb_001767_130 Hb_088163_010--Hb_001767_130 Hb_000230_180 Hb_000230_180 Hb_088163_010--Hb_000230_180 Hb_088163_010--Hb_099878_050 Hb_090158_010 Hb_090158_010 Hb_088163_010--Hb_090158_010 Hb_165402_010 Hb_165402_010 Hb_088163_010--Hb_165402_010 Hb_106415_010--Hb_099878_050 Hb_033385_010 Hb_033385_010 Hb_106415_010--Hb_033385_010 Hb_007083_020 Hb_007083_020 Hb_106415_010--Hb_007083_020 Hb_019053_010 Hb_019053_010 Hb_106415_010--Hb_019053_010 Hb_007333_040 Hb_007333_040 Hb_106415_010--Hb_007333_040 Hb_000825_030 Hb_000825_030 Hb_106415_010--Hb_000825_030 Hb_099878_050--Hb_075764_010 Hb_012506_010 Hb_012506_010 Hb_099878_050--Hb_012506_010 Hb_099878_050--Hb_133724_010 Hb_002687_080 Hb_002687_080 Hb_099878_050--Hb_002687_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.25015 2.46365 3.36596 26.4749 3.55086 16.4661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.11075 3.59822 2.3385 4.00322 3.1394

CAGE analysis