Hb_000053_050

Information

Type -
Description -
Location Contig53: 109005-110045
Sequence    

Annotation

kegg
ID cqu:CpipJ_CPIJ006771
description rab6-interacting
nr
ID EMT33100.1
description hypothetical protein F775_01878 [Aegilops tauschii]
swissprot
ID Q6NXD8
description DENN domain-containing protein 5B OS=Danio rerio GN=dennd5b PE=2 SV=2
trembl
ID M8C6X7
description Uncharacterized protein OS=Aegilops tauschii GN=F775_01878 PE=4 SV=1
Gene Ontology
ID GO:0080008
description denn domain and wd repeat-containing protein scd1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47290: 84757-116794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000053_050 0.0 - - hypothetical protein F775_01878 [Aegilops tauschii]
2 Hb_002368_090 0.2116684709 - - PREDICTED: cationic peroxidase 1-like [Populus euphratica]
3 Hb_001278_080 0.2267198294 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_09311 [Jatropha curcas]
4 Hb_046120_010 0.2322867923 - - -
5 Hb_002023_040 0.2497420521 - - -
6 Hb_000082_020 0.2532858494 - - -
7 Hb_041025_010 0.2564646762 - - PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
8 Hb_032258_020 0.2603949263 - - PREDICTED: amidase 1-like isoform X2 [Malus domestica]
9 Hb_002126_020 0.2630562162 - - ferrochelatase [Medicago truncatula]
10 Hb_094437_040 0.2725251752 - - ankyrin repeat family protein, partial [Manihot esculenta]
11 Hb_060458_010 0.2779712879 - - conserved hypothetical protein [Ricinus communis]
12 Hb_017895_010 0.2818983682 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Prunus mume]
13 Hb_114079_010 0.2839651528 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
14 Hb_000907_040 0.2889908866 - - ankyrin repeat-containing protein, putative [Ricinus communis]
15 Hb_148658_010 0.3075464617 - - -
16 Hb_001810_020 0.3089040373 - - -
17 Hb_169505_010 0.3131604347 - - hypothetical protein JCGZ_04480 [Jatropha curcas]
18 Hb_183522_010 0.3155171055 - - Far upstream element-binding protein, putative [Ricinus communis]
19 Hb_094437_010 0.3157392719 - - -
20 Hb_021068_030 0.3159149351 transcription factor TF Family: M-type hypothetical protein B456_010G032700 [Gossypium raimondii]

Gene co-expression network

sample Hb_000053_050 Hb_000053_050 Hb_002368_090 Hb_002368_090 Hb_000053_050--Hb_002368_090 Hb_001278_080 Hb_001278_080 Hb_000053_050--Hb_001278_080 Hb_046120_010 Hb_046120_010 Hb_000053_050--Hb_046120_010 Hb_002023_040 Hb_002023_040 Hb_000053_050--Hb_002023_040 Hb_000082_020 Hb_000082_020 Hb_000053_050--Hb_000082_020 Hb_041025_010 Hb_041025_010 Hb_000053_050--Hb_041025_010 Hb_002368_090--Hb_001278_080 Hb_032258_020 Hb_032258_020 Hb_002368_090--Hb_032258_020 Hb_030885_020 Hb_030885_020 Hb_002368_090--Hb_030885_020 Hb_047691_010 Hb_047691_010 Hb_002368_090--Hb_047691_010 Hb_002126_020 Hb_002126_020 Hb_002368_090--Hb_002126_020 Hb_001278_080--Hb_002023_040 Hb_017895_010 Hb_017895_010 Hb_001278_080--Hb_017895_010 Hb_021068_030 Hb_021068_030 Hb_001278_080--Hb_021068_030 Hb_002204_040 Hb_002204_040 Hb_001278_080--Hb_002204_040 Hb_046120_010--Hb_000082_020 Hb_046120_010--Hb_041025_010 Hb_114079_010 Hb_114079_010 Hb_046120_010--Hb_114079_010 Hb_001252_200 Hb_001252_200 Hb_046120_010--Hb_001252_200 Hb_000084_130 Hb_000084_130 Hb_046120_010--Hb_000084_130 Hb_046120_010--Hb_032258_020 Hb_001810_020 Hb_001810_020 Hb_002023_040--Hb_001810_020 Hb_002023_040--Hb_021068_030 Hb_000066_180 Hb_000066_180 Hb_002023_040--Hb_000066_180 Hb_000193_030 Hb_000193_030 Hb_002023_040--Hb_000193_030 Hb_000082_020--Hb_041025_010 Hb_000082_020--Hb_114079_010 Hb_007083_020 Hb_007083_020 Hb_000082_020--Hb_007083_020 Hb_183522_010 Hb_183522_010 Hb_000082_020--Hb_183522_010 Hb_106415_010 Hb_106415_010 Hb_000082_020--Hb_106415_010 Hb_041025_010--Hb_114079_010 Hb_041025_010--Hb_183522_010 Hb_010964_020 Hb_010964_020 Hb_041025_010--Hb_010964_020 Hb_169505_010 Hb_169505_010 Hb_041025_010--Hb_169505_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.767584 6.65566 13.4022 0 21.1114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11407 0 0 2.0967 2.11482

CAGE analysis