Hb_000053_110

Information

Type -
Description -
Location Contig53: 188107-193093
Sequence    

Annotation

kegg
ID rcu:RCOM_0704650
description hypothetical protein
nr
ID XP_002524393.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SEH4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0704650 PE=4 SV=1
Gene Ontology
ID GO:0009941
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47294: 191964-192759
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000053_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000866_010 0.0660417561 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004970_190 0.0662663156 - - DCL protein, chloroplast precursor, putative [Ricinus communis]
4 Hb_012395_230 0.0670689053 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
5 Hb_005271_220 0.0679504169 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
6 Hb_000261_020 0.0696660775 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
7 Hb_010222_020 0.07676549 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
8 Hb_000403_050 0.0805651703 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
9 Hb_000869_020 0.0809113736 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
10 Hb_000699_030 0.083117924 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
11 Hb_000883_020 0.0836405027 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
12 Hb_002235_250 0.0843759001 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
13 Hb_000260_100 0.0844288855 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000010_110 0.0856087213 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
15 Hb_000245_220 0.0867272715 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
16 Hb_000649_230 0.0882297321 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
17 Hb_006817_010 0.0892678838 - - PREDICTED: serine/threonine-protein kinase CTR1 isoform X1 [Jatropha curcas]
18 Hb_002141_030 0.091794643 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000753_240 0.0918733304 - - PREDICTED: ADP,ATP carrier protein ER-ANT1 [Jatropha curcas]
20 Hb_001163_050 0.0923442784 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]

Gene co-expression network

sample Hb_000053_110 Hb_000053_110 Hb_000866_010 Hb_000866_010 Hb_000053_110--Hb_000866_010 Hb_004970_190 Hb_004970_190 Hb_000053_110--Hb_004970_190 Hb_012395_230 Hb_012395_230 Hb_000053_110--Hb_012395_230 Hb_005271_220 Hb_005271_220 Hb_000053_110--Hb_005271_220 Hb_000261_020 Hb_000261_020 Hb_000053_110--Hb_000261_020 Hb_010222_020 Hb_010222_020 Hb_000053_110--Hb_010222_020 Hb_006817_010 Hb_006817_010 Hb_000866_010--Hb_006817_010 Hb_009421_020 Hb_009421_020 Hb_000866_010--Hb_009421_020 Hb_007389_010 Hb_007389_010 Hb_000866_010--Hb_007389_010 Hb_000260_100 Hb_000260_100 Hb_000866_010--Hb_000260_100 Hb_002235_250 Hb_002235_250 Hb_000866_010--Hb_002235_250 Hb_004970_190--Hb_012395_230 Hb_000205_190 Hb_000205_190 Hb_004970_190--Hb_000205_190 Hb_007007_120 Hb_007007_120 Hb_004970_190--Hb_007007_120 Hb_003513_010 Hb_003513_010 Hb_004970_190--Hb_003513_010 Hb_000869_020 Hb_000869_020 Hb_004970_190--Hb_000869_020 Hb_000753_240 Hb_000753_240 Hb_004970_190--Hb_000753_240 Hb_008642_040 Hb_008642_040 Hb_012395_230--Hb_008642_040 Hb_002780_020 Hb_002780_020 Hb_012395_230--Hb_002780_020 Hb_000883_020 Hb_000883_020 Hb_012395_230--Hb_000883_020 Hb_012395_230--Hb_003513_010 Hb_005730_120 Hb_005730_120 Hb_005271_220--Hb_005730_120 Hb_002232_410 Hb_002232_410 Hb_005271_220--Hb_002232_410 Hb_002303_070 Hb_002303_070 Hb_005271_220--Hb_002303_070 Hb_032808_010 Hb_032808_010 Hb_005271_220--Hb_032808_010 Hb_008511_120 Hb_008511_120 Hb_005271_220--Hb_008511_120 Hb_000403_050 Hb_000403_050 Hb_005271_220--Hb_000403_050 Hb_000729_030 Hb_000729_030 Hb_000261_020--Hb_000729_030 Hb_028697_010 Hb_028697_010 Hb_000261_020--Hb_028697_010 Hb_003647_140 Hb_003647_140 Hb_000261_020--Hb_003647_140 Hb_000614_160 Hb_000614_160 Hb_000261_020--Hb_000614_160 Hb_000976_120 Hb_000976_120 Hb_000261_020--Hb_000976_120 Hb_004195_270 Hb_004195_270 Hb_010222_020--Hb_004195_270 Hb_000815_320 Hb_000815_320 Hb_010222_020--Hb_000815_320 Hb_009694_010 Hb_009694_010 Hb_010222_020--Hb_009694_010 Hb_004096_090 Hb_004096_090 Hb_010222_020--Hb_004096_090 Hb_001195_480 Hb_001195_480 Hb_010222_020--Hb_001195_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7393 10.7626 16.863 11.5487 11.9599 12.765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.696 17.4085 11.0426 7.61961 13.5718

CAGE analysis