Hb_000053_140

Information

Type -
Description -
Location Contig53: 212172-212657
Sequence    

Annotation

kegg
ID rcu:RCOM_0704790
description hypothetical protein
nr
ID XP_002524397.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SEH8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0704790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000053_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005663_020 0.0040764032 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
3 Hb_001645_080 0.0046049258 transcription factor TF Family: C2H2 palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
4 Hb_001488_170 0.0066031793 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
5 Hb_004092_020 0.0095762625 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
6 Hb_002284_140 0.0099733534 - - hypothetical protein POPTR_0002s00800g [Populus trichocarpa]
7 Hb_000760_090 0.0100557332 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-6 [Vitis vinifera]
8 Hb_005065_090 0.0102970077 - - zinc/iron transporter, putative [Ricinus communis]
9 Hb_000556_210 0.0150720016 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]
10 Hb_001946_090 0.0153623748 - - -
11 Hb_010543_010 0.0164052451 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
12 Hb_002106_020 0.0176580199 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]
13 Hb_000152_690 0.0191566573 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
14 Hb_183658_010 0.0206119675 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
15 Hb_151697_010 0.0217161937 - - clathrin assembly protein, putative [Ricinus communis]
16 Hb_009711_060 0.021977668 - - -
17 Hb_102933_010 0.0243264129 - - Pectate lyase precursor, putative [Ricinus communis]
18 Hb_001104_030 0.0289199519 - - PREDICTED: uncharacterized protein LOC105125581 [Populus euphratica]
19 Hb_003792_010 0.0298091703 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002254_020 0.0315570088 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_000053_140 Hb_000053_140 Hb_005663_020 Hb_005663_020 Hb_000053_140--Hb_005663_020 Hb_001645_080 Hb_001645_080 Hb_000053_140--Hb_001645_080 Hb_001488_170 Hb_001488_170 Hb_000053_140--Hb_001488_170 Hb_004092_020 Hb_004092_020 Hb_000053_140--Hb_004092_020 Hb_002284_140 Hb_002284_140 Hb_000053_140--Hb_002284_140 Hb_000760_090 Hb_000760_090 Hb_000053_140--Hb_000760_090 Hb_005663_020--Hb_001645_080 Hb_005663_020--Hb_001488_170 Hb_005663_020--Hb_000760_090 Hb_005065_090 Hb_005065_090 Hb_005663_020--Hb_005065_090 Hb_001946_090 Hb_001946_090 Hb_005663_020--Hb_001946_090 Hb_001645_080--Hb_001488_170 Hb_001645_080--Hb_000760_090 Hb_001645_080--Hb_005065_090 Hb_001645_080--Hb_001946_090 Hb_001488_170--Hb_000760_090 Hb_001488_170--Hb_005065_090 Hb_001488_170--Hb_001946_090 Hb_004092_020--Hb_002284_140 Hb_000556_210 Hb_000556_210 Hb_004092_020--Hb_000556_210 Hb_002106_020 Hb_002106_020 Hb_004092_020--Hb_002106_020 Hb_183658_010 Hb_183658_010 Hb_004092_020--Hb_183658_010 Hb_151697_010 Hb_151697_010 Hb_004092_020--Hb_151697_010 Hb_002284_140--Hb_000556_210 Hb_002284_140--Hb_002106_020 Hb_002284_140--Hb_183658_010 Hb_002284_140--Hb_151697_010 Hb_000760_090--Hb_005065_090 Hb_000760_090--Hb_001946_090 Hb_010543_010 Hb_010543_010 Hb_000760_090--Hb_010543_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0989087 0.0808431 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis