Hb_000054_040

Information

Type -
Description -
Location Contig54: 48565-86412
Sequence    

Annotation

kegg
ID pop:POPTR_0008s00800g
description POPTRDRAFT_655661; hypothetical protein
nr
ID XP_012076067.1
description PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
swissprot
ID Q9C512
description Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 OS=Arabidopsis thaliana GN=MNS1 PE=1 SV=1
trembl
ID A0A067KDY2
description alpha-1,2-Mannosidase OS=Jatropha curcas GN=JCGZ_11912 PE=3 SV=1
Gene Ontology
ID GO:0016020
description mannosyl-oligosaccharide -alpha-mannosidase mns1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47779: 48645-86116 , PASA_asmbl_47780: 68658-87226 , PASA_asmbl_47781: 86144-86348
cDNA
(Sanger)
(ID:Location)		 020_G05.ab1: 48654-59380 , 039_J18.ab1: 48654-59347 , 042_I19.ab1: 48654-59341

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000054_040 0.0 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
2 Hb_000261_210 0.0604203804 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
3 Hb_000503_020 0.0617620741 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
4 Hb_000320_290 0.0670066964 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
5 Hb_002473_050 0.075418439 - - catalytic, putative [Ricinus communis]
6 Hb_001246_130 0.0784477246 - - PREDICTED: NAD-dependent malic enzyme 62 kDa isoform, mitochondrial [Jatropha curcas]
7 Hb_005062_110 0.0803240184 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]
8 Hb_001159_030 0.0840620744 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
9 Hb_004724_390 0.084991898 - - PREDICTED: nicalin-1-like [Populus euphratica]
10 Hb_002007_260 0.0851472198 - - beta-mannosidase, putative [Ricinus communis]
11 Hb_030982_010 0.0853807067 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000359_190 0.0881531668 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
13 Hb_000161_210 0.0885456639 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
14 Hb_001677_200 0.0888235487 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000258_220 0.0890571957 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
16 Hb_002045_170 0.0892787268 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
17 Hb_006120_050 0.0905474865 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
18 Hb_000085_260 0.0906911664 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
19 Hb_000205_280 0.0916752131 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
20 Hb_012760_030 0.0922182142 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]

Gene co-expression network

sample Hb_000054_040 Hb_000054_040 Hb_000261_210 Hb_000261_210 Hb_000054_040--Hb_000261_210 Hb_000503_020 Hb_000503_020 Hb_000054_040--Hb_000503_020 Hb_000320_290 Hb_000320_290 Hb_000054_040--Hb_000320_290 Hb_002473_050 Hb_002473_050 Hb_000054_040--Hb_002473_050 Hb_001246_130 Hb_001246_130 Hb_000054_040--Hb_001246_130 Hb_005062_110 Hb_005062_110 Hb_000054_040--Hb_005062_110 Hb_000261_210--Hb_002473_050 Hb_001002_060 Hb_001002_060 Hb_000261_210--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_000261_210--Hb_025668_010 Hb_002351_030 Hb_002351_030 Hb_000261_210--Hb_002351_030 Hb_000371_090 Hb_000371_090 Hb_000261_210--Hb_000371_090 Hb_000503_020--Hb_005062_110 Hb_000503_020--Hb_000320_290 Hb_000085_260 Hb_000085_260 Hb_000503_020--Hb_000085_260 Hb_006120_050 Hb_006120_050 Hb_000503_020--Hb_006120_050 Hb_000503_020--Hb_001246_130 Hb_121089_030 Hb_121089_030 Hb_000320_290--Hb_121089_030 Hb_010042_030 Hb_010042_030 Hb_000320_290--Hb_010042_030 Hb_188063_050 Hb_188063_050 Hb_000320_290--Hb_188063_050 Hb_030982_010 Hb_030982_010 Hb_000320_290--Hb_030982_010 Hb_000098_050 Hb_000098_050 Hb_000320_290--Hb_000098_050 Hb_002473_050--Hb_025668_010 Hb_000101_080 Hb_000101_080 Hb_002473_050--Hb_000101_080 Hb_007982_030 Hb_007982_030 Hb_002473_050--Hb_007982_030 Hb_002473_050--Hb_002351_030 Hb_002007_260 Hb_002007_260 Hb_001246_130--Hb_002007_260 Hb_001246_130--Hb_030982_010 Hb_001246_130--Hb_006120_050 Hb_002552_040 Hb_002552_040 Hb_001246_130--Hb_002552_040 Hb_002045_170 Hb_002045_170 Hb_001246_130--Hb_002045_170 Hb_005062_110--Hb_000085_260 Hb_005062_110--Hb_010042_030 Hb_001159_030 Hb_001159_030 Hb_005062_110--Hb_001159_030 Hb_000622_110 Hb_000622_110 Hb_005062_110--Hb_000622_110 Hb_002486_050 Hb_002486_050 Hb_005062_110--Hb_002486_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.72618 9.07041 15.1757 21.3245 10.6432 8.87626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.15567 3.54726 5.516 11.0567 10.6629

CAGE analysis