Hb_000054_090

Information

Type -
Description -
Location Contig54: 161198-170892
Sequence    

Annotation

kegg
ID rcu:RCOM_0728630
description zinc finger protein, putative
nr
ID XP_002523028.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q7XA86
description Protein S-acyltransferase 10 OS=Arabidopsis thaliana GN=PAT10 PE=1 SV=1
trembl
ID B9SAK9
description S-acyltransferase OS=Ricinus communis GN=RCOM_0728630 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein s-acyltransferase 10-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47782: 161328-161479 , PASA_asmbl_47783: 161819-162150 , PASA_asmbl_47784: 168199-168541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000054_090 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_007672_060 0.0651126084 transcription factor TF Family: SWI/SNF-BAF60b Upstream activation factor subunit UAF30, putative [Ricinus communis]
3 Hb_001252_130 0.0690723929 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
4 Hb_007017_030 0.0694713674 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
5 Hb_000081_160 0.071030956 - - PREDICTED: uncharacterized protein At4g17910 [Jatropha curcas]
6 Hb_001971_010 0.07113648 - - F23N19.4 [Arabidopsis thaliana]
7 Hb_000173_290 0.0715478535 - - guanylate kinase, putative [Ricinus communis]
8 Hb_033594_120 0.0720720663 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
9 Hb_001579_270 0.0737808796 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
10 Hb_008748_040 0.0751619491 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
11 Hb_000441_200 0.0778841963 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]
12 Hb_003633_030 0.0780724406 - - f-actin capping protein alpha, putative [Ricinus communis]
13 Hb_000599_300 0.07819279 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
14 Hb_003665_060 0.0782508362 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
15 Hb_003125_160 0.0784942931 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
16 Hb_000215_110 0.0805980343 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
17 Hb_000120_790 0.0810169737 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
18 Hb_000331_260 0.0822309589 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
19 Hb_002200_080 0.0824277375 - - PREDICTED: uncharacterized protein C57A10.07 [Jatropha curcas]
20 Hb_005697_060 0.0830943925 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000054_090 Hb_000054_090 Hb_007672_060 Hb_007672_060 Hb_000054_090--Hb_007672_060 Hb_001252_130 Hb_001252_130 Hb_000054_090--Hb_001252_130 Hb_007017_030 Hb_007017_030 Hb_000054_090--Hb_007017_030 Hb_000081_160 Hb_000081_160 Hb_000054_090--Hb_000081_160 Hb_001971_010 Hb_001971_010 Hb_000054_090--Hb_001971_010 Hb_000173_290 Hb_000173_290 Hb_000054_090--Hb_000173_290 Hb_002947_030 Hb_002947_030 Hb_007672_060--Hb_002947_030 Hb_001579_270 Hb_001579_270 Hb_007672_060--Hb_001579_270 Hb_000599_300 Hb_000599_300 Hb_007672_060--Hb_000599_300 Hb_033594_120 Hb_033594_120 Hb_007672_060--Hb_033594_120 Hb_003428_030 Hb_003428_030 Hb_007672_060--Hb_003428_030 Hb_005496_140 Hb_005496_140 Hb_001252_130--Hb_005496_140 Hb_001252_130--Hb_000081_160 Hb_001252_130--Hb_001971_010 Hb_000599_250 Hb_000599_250 Hb_001252_130--Hb_000599_250 Hb_000215_110 Hb_000215_110 Hb_001252_130--Hb_000215_110 Hb_002893_080 Hb_002893_080 Hb_007017_030--Hb_002893_080 Hb_001279_150 Hb_001279_150 Hb_007017_030--Hb_001279_150 Hb_008406_190 Hb_008406_190 Hb_007017_030--Hb_008406_190 Hb_001828_190 Hb_001828_190 Hb_007017_030--Hb_001828_190 Hb_003633_030 Hb_003633_030 Hb_007017_030--Hb_003633_030 Hb_015934_070 Hb_015934_070 Hb_007017_030--Hb_015934_070 Hb_000081_160--Hb_000215_110 Hb_002641_060 Hb_002641_060 Hb_000081_160--Hb_002641_060 Hb_001318_280 Hb_001318_280 Hb_000081_160--Hb_001318_280 Hb_000431_170 Hb_000431_170 Hb_000081_160--Hb_000431_170 Hb_001599_040 Hb_001599_040 Hb_000081_160--Hb_001599_040 Hb_000331_260 Hb_000331_260 Hb_001971_010--Hb_000331_260 Hb_002235_250 Hb_002235_250 Hb_001971_010--Hb_002235_250 Hb_002600_090 Hb_002600_090 Hb_001971_010--Hb_002600_090 Hb_006478_020 Hb_006478_020 Hb_001971_010--Hb_006478_020 Hb_000172_290 Hb_000172_290 Hb_001971_010--Hb_000172_290 Hb_000120_790 Hb_000120_790 Hb_000173_290--Hb_000120_790 Hb_000206_210 Hb_000206_210 Hb_000173_290--Hb_000206_210 Hb_000342_130 Hb_000342_130 Hb_000173_290--Hb_000342_130 Hb_002200_080 Hb_002200_080 Hb_000173_290--Hb_002200_080 Hb_000777_040 Hb_000777_040 Hb_000173_290--Hb_000777_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.15414 3.46359 5.25547 8.53434 9.08429 9.63173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.39539 11.1 6.8599 6.79901 8.12148

CAGE analysis