Hb_000055_100

Information

Type -
Description -
Location Contig55: 191718-199566
Sequence    

Annotation

kegg
ID sbi:SORBI_07g003556
description SORBIDRAFT_07g003556, Sb07g003556; hypothetical protein
nr
ID BAA22288.1
description polyprotein [Oryza australiensis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID O23864
description Polyprotein OS=Oryza australiensis PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000055_100 0.0 - - polyprotein [Oryza australiensis]
2 Hb_000368_130 0.0007710483 - - conserved hypothetical protein [Ricinus communis]
3 Hb_088224_010 0.0054897872 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
4 Hb_000245_240 0.006734326 - - -
5 Hb_000085_110 0.0076722217 - - hypothetical protein JCGZ_00957 [Jatropha curcas]
6 Hb_073171_060 0.0128416015 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
7 Hb_010272_020 0.0244953959 - - hypothetical protein VITISV_030841 [Vitis vinifera]
8 Hb_004888_050 0.0445759332 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_007586_020 0.0461856261 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
10 Hb_150498_010 0.0528718983 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
11 Hb_003362_010 0.0683310637 - - Actin-related protein 2/3 complex subunit 4 [Morus notabilis]
12 Hb_157349_010 0.0703675406 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
13 Hb_001274_010 0.0792625058 - - -
14 Hb_007639_010 0.102994416 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
15 Hb_000483_170 0.1034881924 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
16 Hb_000589_430 0.1158435171 - - hypothetical protein JCGZ_01402 [Jatropha curcas]
17 Hb_129358_010 0.1293795951 - - PREDICTED: AT-hook motif nuclear-localized protein 11-like [Jatropha curcas]
18 Hb_001792_010 0.1388639356 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
19 Hb_002641_150 0.1396214058 - - PREDICTED: stachyose synthase-like [Citrus sinensis]
20 Hb_001998_040 0.1406884038 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000055_100 Hb_000055_100 Hb_000368_130 Hb_000368_130 Hb_000055_100--Hb_000368_130 Hb_088224_010 Hb_088224_010 Hb_000055_100--Hb_088224_010 Hb_000245_240 Hb_000245_240 Hb_000055_100--Hb_000245_240 Hb_000085_110 Hb_000085_110 Hb_000055_100--Hb_000085_110 Hb_073171_060 Hb_073171_060 Hb_000055_100--Hb_073171_060 Hb_010272_020 Hb_010272_020 Hb_000055_100--Hb_010272_020 Hb_000368_130--Hb_088224_010 Hb_000368_130--Hb_000245_240 Hb_000368_130--Hb_000085_110 Hb_000368_130--Hb_073171_060 Hb_000368_130--Hb_010272_020 Hb_088224_010--Hb_000245_240 Hb_088224_010--Hb_000085_110 Hb_088224_010--Hb_073171_060 Hb_088224_010--Hb_010272_020 Hb_000245_240--Hb_000085_110 Hb_000245_240--Hb_073171_060 Hb_000245_240--Hb_010272_020 Hb_000085_110--Hb_073171_060 Hb_000085_110--Hb_010272_020 Hb_073171_060--Hb_010272_020 Hb_150498_010 Hb_150498_010 Hb_010272_020--Hb_150498_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0275223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0112475 0

CAGE analysis