Hb_000056_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig56: 3731-6265
Sequence    

Annotation

kegg
ID pop:POPTR_0006s01550g
description POPTRDRAFT_560178; hypothetical protein
nr
ID XP_011008978.1
description PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
swissprot
ID Q38834
description Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2
trembl
ID B9HCU2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01550g PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance rpp13-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
2 Hb_024698_010 0.100051406 - - PREDICTED: RING-H2 finger protein ATL46 [Jatropha curcas]
3 Hb_097646_010 0.1497609032 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
4 Hb_003001_040 0.1563251304 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
5 Hb_000579_030 0.1661207636 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 3 [Jatropha curcas]
6 Hb_006422_020 0.1703045441 - - PREDICTED: uncharacterized protein LOC105649338 [Jatropha curcas]
7 Hb_004116_180 0.172053067 - - PREDICTED: uncharacterized protein LOC105646147 [Jatropha curcas]
8 Hb_011930_100 0.1775904405 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
9 Hb_011828_010 0.1776626036 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
10 Hb_001754_060 0.1793019872 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
11 Hb_003376_260 0.1807978535 - - PREDICTED: uncharacterized protein LOC105642207 isoform X1 [Jatropha curcas]
12 Hb_002311_190 0.1879911224 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
13 Hb_010812_110 0.1898756038 - - putative plant disease resistance family protein [Populus trichocarpa]
14 Hb_003090_160 0.1908247656 - - -
15 Hb_000920_290 0.1909555921 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
16 Hb_004738_030 0.1933013252 - - Inactive protein kinase [Gossypium arboreum]
17 Hb_002374_550 0.1945768028 - - PREDICTED: aspartic proteinase nepenthesin-1 [Jatropha curcas]
18 Hb_000120_530 0.1977344494 transcription factor TF Family: C3H RING finger protein 113A, putative [Ricinus communis]
19 Hb_116420_040 0.1981005332 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000922_060 0.1989265453 - - kinesin light chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_000056_010 Hb_000056_010 Hb_024698_010 Hb_024698_010 Hb_000056_010--Hb_024698_010 Hb_097646_010 Hb_097646_010 Hb_000056_010--Hb_097646_010 Hb_003001_040 Hb_003001_040 Hb_000056_010--Hb_003001_040 Hb_000579_030 Hb_000579_030 Hb_000056_010--Hb_000579_030 Hb_006422_020 Hb_006422_020 Hb_000056_010--Hb_006422_020 Hb_004116_180 Hb_004116_180 Hb_000056_010--Hb_004116_180 Hb_003376_260 Hb_003376_260 Hb_024698_010--Hb_003376_260 Hb_024698_010--Hb_097646_010 Hb_024698_010--Hb_003001_040 Hb_005048_140 Hb_005048_140 Hb_024698_010--Hb_005048_140 Hb_116420_040 Hb_116420_040 Hb_024698_010--Hb_116420_040 Hb_100525_010 Hb_100525_010 Hb_097646_010--Hb_100525_010 Hb_097646_010--Hb_003001_040 Hb_097646_010--Hb_003376_260 Hb_027380_230 Hb_027380_230 Hb_097646_010--Hb_027380_230 Hb_020805_100 Hb_020805_100 Hb_003001_040--Hb_020805_100 Hb_000334_130 Hb_000334_130 Hb_003001_040--Hb_000334_130 Hb_000979_240 Hb_000979_240 Hb_003001_040--Hb_000979_240 Hb_000358_200 Hb_000358_200 Hb_003001_040--Hb_000358_200 Hb_000579_030--Hb_004116_180 Hb_001269_050 Hb_001269_050 Hb_000579_030--Hb_001269_050 Hb_000473_120 Hb_000473_120 Hb_000579_030--Hb_000473_120 Hb_000492_080 Hb_000492_080 Hb_000579_030--Hb_000492_080 Hb_023765_010 Hb_023765_010 Hb_000579_030--Hb_023765_010 Hb_001446_060 Hb_001446_060 Hb_000579_030--Hb_001446_060 Hb_000997_100 Hb_000997_100 Hb_006422_020--Hb_000997_100 Hb_000031_230 Hb_000031_230 Hb_006422_020--Hb_000031_230 Hb_000815_230 Hb_000815_230 Hb_006422_020--Hb_000815_230 Hb_000042_060 Hb_000042_060 Hb_006422_020--Hb_000042_060 Hb_000964_170 Hb_000964_170 Hb_006422_020--Hb_000964_170 Hb_003849_160 Hb_003849_160 Hb_006422_020--Hb_003849_160 Hb_001673_060 Hb_001673_060 Hb_004116_180--Hb_001673_060 Hb_033152_100 Hb_033152_100 Hb_004116_180--Hb_033152_100 Hb_001226_110 Hb_001226_110 Hb_004116_180--Hb_001226_110 Hb_000920_290 Hb_000920_290 Hb_004116_180--Hb_000920_290 Hb_000340_080 Hb_000340_080 Hb_004116_180--Hb_000340_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.90164 11.2941 5.58489 14.5679 5.533 5.17494
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.296833 0.194625 2.83522 1.29415 9.35408

CAGE analysis