Hb_000056_030

Information

Type -
Description -
Location Contig56: 20576-23425
Sequence    

Annotation

kegg
ID rcu:RCOM_0697760
description Serine/threonine-protein kinase PBS1, putative
nr
ID XP_012091924.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g14390 isoform X1 [Jatropha curcas]
swissprot
ID Q9M9S4
description Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana GN=At1g14390 PE=2 SV=1
trembl
ID A0A067JBP7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21687 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at1g14390

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48672: 20625-23898
cDNA
(Sanger)
(ID:Location)		 024_F12.ab1: 23117-23777 , 034_B19.ab1: 22989-23777

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_030 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g14390 isoform X1 [Jatropha curcas]
2 Hb_000032_360 0.1402011887 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Jatropha curcas]
3 Hb_011033_010 0.1413099421 - - ATP-binding cassette transporter, putative [Ricinus communis]
4 Hb_003581_230 0.1571408255 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
5 Hb_000925_150 0.157799042 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
6 Hb_012055_080 0.1622838628 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
7 Hb_005890_020 0.1627273372 - - putative plant disease resistance family protein [Populus trichocarpa]
8 Hb_000061_430 0.1633824847 - - conserved hypothetical protein [Ricinus communis]
9 Hb_018133_070 0.1673342875 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
10 Hb_004447_050 0.1728836891 - - PREDICTED: high-light-induced protein, chloroplastic [Jatropha curcas]
11 Hb_000130_130 0.1742414315 - - hypothetical protein POPTR_0001s40330g [Populus trichocarpa]
12 Hb_000438_160 0.1752690409 - - conserved hypothetical protein [Ricinus communis]
13 Hb_136441_010 0.176315006 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
14 Hb_029576_060 0.1874417581 - - PREDICTED: uncharacterized protein LOC105646366 [Jatropha curcas]
15 Hb_000352_010 0.1890615748 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
16 Hb_004115_010 0.1896459401 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HDG11 [Jatropha curcas]
17 Hb_001221_060 0.1902541539 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
18 Hb_000932_110 0.1921553863 - - Root phototropism protein, putative [Ricinus communis]
19 Hb_000139_040 0.1945149178 - - spermine synthase, putative [Ricinus communis]
20 Hb_001680_020 0.1947702743 desease resistance Gene Name: RPW8 Disease resistance protein ADR1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000056_030 Hb_000056_030 Hb_000032_360 Hb_000032_360 Hb_000056_030--Hb_000032_360 Hb_011033_010 Hb_011033_010 Hb_000056_030--Hb_011033_010 Hb_003581_230 Hb_003581_230 Hb_000056_030--Hb_003581_230 Hb_000925_150 Hb_000925_150 Hb_000056_030--Hb_000925_150 Hb_012055_080 Hb_012055_080 Hb_000056_030--Hb_012055_080 Hb_005890_020 Hb_005890_020 Hb_000056_030--Hb_005890_020 Hb_000130_130 Hb_000130_130 Hb_000032_360--Hb_000130_130 Hb_004447_050 Hb_004447_050 Hb_000032_360--Hb_004447_050 Hb_000032_360--Hb_003581_230 Hb_001141_350 Hb_001141_350 Hb_000032_360--Hb_001141_350 Hb_018133_070 Hb_018133_070 Hb_000032_360--Hb_018133_070 Hb_001221_060 Hb_001221_060 Hb_000032_360--Hb_001221_060 Hb_010288_030 Hb_010288_030 Hb_011033_010--Hb_010288_030 Hb_071674_010 Hb_071674_010 Hb_011033_010--Hb_071674_010 Hb_000061_430 Hb_000061_430 Hb_011033_010--Hb_000061_430 Hb_011033_010--Hb_005890_020 Hb_011033_010--Hb_012055_080 Hb_011033_010--Hb_018133_070 Hb_004220_010 Hb_004220_010 Hb_003581_230--Hb_004220_010 Hb_029576_060 Hb_029576_060 Hb_003581_230--Hb_029576_060 Hb_001148_110 Hb_001148_110 Hb_003581_230--Hb_001148_110 Hb_000976_400 Hb_000976_400 Hb_003581_230--Hb_000976_400 Hb_001439_080 Hb_001439_080 Hb_003581_230--Hb_001439_080 Hb_000925_150--Hb_018133_070 Hb_002374_470 Hb_002374_470 Hb_000925_150--Hb_002374_470 Hb_000925_150--Hb_012055_080 Hb_000925_150--Hb_005890_020 Hb_004115_010 Hb_004115_010 Hb_000925_150--Hb_004115_010 Hb_000925_150--Hb_011033_010 Hb_003935_090 Hb_003935_090 Hb_012055_080--Hb_003935_090 Hb_007952_050 Hb_007952_050 Hb_012055_080--Hb_007952_050 Hb_007574_020 Hb_007574_020 Hb_012055_080--Hb_007574_020 Hb_004218_050 Hb_004218_050 Hb_012055_080--Hb_004218_050 Hb_005496_040 Hb_005496_040 Hb_005890_020--Hb_005496_040 Hb_001080_190 Hb_001080_190 Hb_005890_020--Hb_001080_190 Hb_002301_400 Hb_002301_400 Hb_005890_020--Hb_002301_400 Hb_005890_020--Hb_001439_080 Hb_017383_010 Hb_017383_010 Hb_005890_020--Hb_017383_010 Hb_000103_220 Hb_000103_220 Hb_005890_020--Hb_000103_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.305616 2.64752 24.439 13.5358 3.45766 0.621129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0292405 0 0.116155 9.46828

CAGE analysis