Hb_000056_070

Information

Type -
Description -
Location Contig56: 110917-116332
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48676: 110944-116288 , PASA_asmbl_48677: 110947-116270 , PASA_asmbl_48678: 111868-112202 , PASA_asmbl_48680: 117225-121930 , PASA_asmbl_48682: 117219-121930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_070 0.0 - - -
2 Hb_002872_050 0.0877456039 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
3 Hb_001019_150 0.0901250333 - - Acyl-protein thioesterase, putative [Ricinus communis]
4 Hb_003880_030 0.0933317336 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
5 Hb_003106_100 0.0964493445 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
6 Hb_001329_150 0.0971814754 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
7 Hb_003050_280 0.099997644 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
8 Hb_000096_150 0.1037448745 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
9 Hb_001979_020 0.1041107928 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
10 Hb_002876_020 0.1078383981 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
11 Hb_000445_490 0.1081418547 - - -
12 Hb_001575_060 0.1096170985 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
13 Hb_000403_070 0.1124378373 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000318_160 0.1127465593 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
15 Hb_001053_140 0.1130494132 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
16 Hb_000056_250 0.1154350175 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
17 Hb_161175_010 0.1155573988 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
18 Hb_072922_020 0.1171511812 - - SNARE-like superfamily protein [Theobroma cacao]
19 Hb_002613_020 0.1175247981 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]
20 Hb_001728_060 0.1195607981 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]

Gene co-expression network

sample Hb_000056_070 Hb_000056_070 Hb_002872_050 Hb_002872_050 Hb_000056_070--Hb_002872_050 Hb_001019_150 Hb_001019_150 Hb_000056_070--Hb_001019_150 Hb_003880_030 Hb_003880_030 Hb_000056_070--Hb_003880_030 Hb_003106_100 Hb_003106_100 Hb_000056_070--Hb_003106_100 Hb_001329_150 Hb_001329_150 Hb_000056_070--Hb_001329_150 Hb_003050_280 Hb_003050_280 Hb_000056_070--Hb_003050_280 Hb_007827_010 Hb_007827_010 Hb_002872_050--Hb_007827_010 Hb_002872_050--Hb_003050_280 Hb_000107_150 Hb_000107_150 Hb_002872_050--Hb_000107_150 Hb_001318_260 Hb_001318_260 Hb_002872_050--Hb_001318_260 Hb_011689_120 Hb_011689_120 Hb_002872_050--Hb_011689_120 Hb_001019_150--Hb_003106_100 Hb_002876_020 Hb_002876_020 Hb_001019_150--Hb_002876_020 Hb_001019_150--Hb_007827_010 Hb_001019_150--Hb_001329_150 Hb_001353_010 Hb_001353_010 Hb_001019_150--Hb_001353_010 Hb_000673_020 Hb_000673_020 Hb_003880_030--Hb_000673_020 Hb_000384_120 Hb_000384_120 Hb_003880_030--Hb_000384_120 Hb_072922_020 Hb_072922_020 Hb_003880_030--Hb_072922_020 Hb_001979_020 Hb_001979_020 Hb_003880_030--Hb_001979_020 Hb_003880_030--Hb_001329_150 Hb_000922_040 Hb_000922_040 Hb_003880_030--Hb_000922_040 Hb_003106_100--Hb_002876_020 Hb_000649_140 Hb_000649_140 Hb_003106_100--Hb_000649_140 Hb_000428_060 Hb_000428_060 Hb_003106_100--Hb_000428_060 Hb_003106_100--Hb_001353_010 Hb_000465_070 Hb_000465_070 Hb_003106_100--Hb_000465_070 Hb_001053_140 Hb_001053_140 Hb_001329_150--Hb_001053_140 Hb_000419_070 Hb_000419_070 Hb_001329_150--Hb_000419_070 Hb_000571_020 Hb_000571_020 Hb_001329_150--Hb_000571_020 Hb_002000_140 Hb_002000_140 Hb_001329_150--Hb_002000_140 Hb_002303_060 Hb_002303_060 Hb_001329_150--Hb_002303_060 Hb_000189_240 Hb_000189_240 Hb_001329_150--Hb_000189_240 Hb_000318_160 Hb_000318_160 Hb_003050_280--Hb_000318_160 Hb_004125_040 Hb_004125_040 Hb_003050_280--Hb_004125_040 Hb_003349_080 Hb_003349_080 Hb_003050_280--Hb_003349_080 Hb_000224_140 Hb_000224_140 Hb_003050_280--Hb_000224_140 Hb_007576_170 Hb_007576_170 Hb_003050_280--Hb_007576_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9062 5.17179 27.3366 35.1598 8.18344 11.8775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.0789 79.5092 37.2715 26.3404 44.5302

CAGE analysis