Hb_000056_080

Information

Type -
Description -
Location Contig56: 117157-121928
Sequence    

Annotation

kegg
ID rcu:RCOM_0697600
description Protein kinase APK1A, chloroplast precursor, putative (EC:2.7.10.2)
nr
ID XP_012091915.1
description PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
swissprot
ID O49840
description Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=2 SV=1
trembl
ID A0A067JNZ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21680 PE=3 SV=1
Gene Ontology
ID GO:0004674
description kinase 2b family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48680: 117225-121930 , PASA_asmbl_48681: 121266-121930 , PASA_asmbl_48682: 117219-121930 , PASA_asmbl_48683: 121079-121930
cDNA
(Sanger)
(ID:Location)		 033_M14.ab1: 119962-121850 , 044_M15.ab1: 119922-121850

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_080 0.0 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
2 Hb_002849_070 0.0759583881 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
3 Hb_000200_170 0.0851062725 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Populus euphratica]
4 Hb_000203_270 0.1109356122 - - alpha-xylosidase, putative [Ricinus communis]
5 Hb_003670_030 0.1131963698 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
6 Hb_000735_140 0.1134765444 - - 3-glucanase family protein [Populus trichocarpa]
7 Hb_003849_190 0.1221752085 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
8 Hb_001818_060 0.1238639999 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
9 Hb_056196_060 0.1241845521 - - hexokinase [Manihot esculenta]
10 Hb_005714_100 0.1270165195 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
11 Hb_004724_330 0.1277515243 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
12 Hb_000465_260 0.1315136877 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
13 Hb_005054_020 0.1328873468 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
14 Hb_007382_100 0.1331887539 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
15 Hb_002325_060 0.1343573408 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
16 Hb_000110_300 0.1369983526 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
17 Hb_002875_070 0.1373464184 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
18 Hb_002349_030 0.1384981768 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004218_120 0.13893197 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
20 Hb_014720_050 0.1389621461 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]

Gene co-expression network

sample Hb_000056_080 Hb_000056_080 Hb_002849_070 Hb_002849_070 Hb_000056_080--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_000056_080--Hb_000200_170 Hb_000203_270 Hb_000203_270 Hb_000056_080--Hb_000203_270 Hb_003670_030 Hb_003670_030 Hb_000056_080--Hb_003670_030 Hb_000735_140 Hb_000735_140 Hb_000056_080--Hb_000735_140 Hb_003849_190 Hb_003849_190 Hb_000056_080--Hb_003849_190 Hb_002849_070--Hb_000200_170 Hb_002849_070--Hb_000203_270 Hb_002849_070--Hb_000735_140 Hb_033363_010 Hb_033363_010 Hb_002849_070--Hb_033363_010 Hb_001818_060 Hb_001818_060 Hb_002849_070--Hb_001818_060 Hb_004724_330 Hb_004724_330 Hb_000200_170--Hb_004724_330 Hb_000200_170--Hb_000203_270 Hb_143766_030 Hb_143766_030 Hb_000200_170--Hb_143766_030 Hb_000200_170--Hb_001818_060 Hb_004987_020 Hb_004987_020 Hb_000203_270--Hb_004987_020 Hb_002739_120 Hb_002739_120 Hb_000203_270--Hb_002739_120 Hb_001135_030 Hb_001135_030 Hb_000203_270--Hb_001135_030 Hb_003599_030 Hb_003599_030 Hb_000203_270--Hb_003599_030 Hb_005064_070 Hb_005064_070 Hb_003670_030--Hb_005064_070 Hb_056196_060 Hb_056196_060 Hb_003670_030--Hb_056196_060 Hb_002325_060 Hb_002325_060 Hb_003670_030--Hb_002325_060 Hb_000375_060 Hb_000375_060 Hb_003670_030--Hb_000375_060 Hb_000000_480 Hb_000000_480 Hb_003670_030--Hb_000000_480 Hb_000735_140--Hb_003849_190 Hb_000735_140--Hb_143766_030 Hb_000111_370 Hb_000111_370 Hb_000735_140--Hb_000111_370 Hb_000735_080 Hb_000735_080 Hb_000735_140--Hb_000735_080 Hb_008248_020 Hb_008248_020 Hb_003849_190--Hb_008248_020 Hb_023344_110 Hb_023344_110 Hb_003849_190--Hb_023344_110 Hb_002875_070 Hb_002875_070 Hb_003849_190--Hb_002875_070 Hb_002450_030 Hb_002450_030 Hb_003849_190--Hb_002450_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.02421 25.6015 13.9883 28.9982 1.80061 3.16437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.75461 5.72257 3.31115 9.82373 7.94054

CAGE analysis