Hb_000056_100

Information

Type -
Description -
Location Contig56: 159453-164739
Sequence    

Annotation

kegg
ID rcu:RCOM_0697470
description myb124, putative
nr
ID XP_012067595.1
description PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LAN9
description MYB family protein OS=Jatropha curcas GN=JCGZ_15571 PE=4 SV=1
Gene Ontology
ID GO:0005488
description pre-mrna-splicing factor cef1-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48688: 159931-163751 , PASA_asmbl_48689: 165691-166328
cDNA
(Sanger)
(ID:Location)		 045_O03.ab1: 165691-166328

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_100 0.0 - - PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
2 Hb_010863_080 0.0913060951 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]
3 Hb_000500_040 0.0935690388 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000124_020 0.0938750819 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
5 Hb_002890_280 0.0953880269 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
6 Hb_000856_340 0.0996357539 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
7 Hb_003861_080 0.1040119349 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
8 Hb_009382_020 0.1052017819 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
9 Hb_000120_050 0.1058026933 - - PREDICTED: protein ELF4-LIKE 1 [Jatropha curcas]
10 Hb_000622_310 0.1063208318 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
11 Hb_003297_030 0.1129339315 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
12 Hb_006501_040 0.1141218268 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Jatropha curcas]
13 Hb_000417_180 0.1146649138 - - 60S ribosomal protein L11, putative [Ricinus communis]
14 Hb_031089_010 0.1166539216 - - DNA binding protein, putative [Ricinus communis]
15 Hb_003025_090 0.1168184793 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
16 Hb_000975_290 0.1176362173 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
17 Hb_000179_210 0.1190812857 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
18 Hb_000853_110 0.1196867409 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
19 Hb_001856_020 0.1198109334 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
20 Hb_002119_060 0.1198143134 transcription factor TF Family: Orphans histidine kinase 1, 2, 3 plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_000056_100 Hb_000056_100 Hb_010863_080 Hb_010863_080 Hb_000056_100--Hb_010863_080 Hb_000500_040 Hb_000500_040 Hb_000056_100--Hb_000500_040 Hb_000124_020 Hb_000124_020 Hb_000056_100--Hb_000124_020 Hb_002890_280 Hb_002890_280 Hb_000056_100--Hb_002890_280 Hb_000856_340 Hb_000856_340 Hb_000056_100--Hb_000856_340 Hb_003861_080 Hb_003861_080 Hb_000056_100--Hb_003861_080 Hb_003297_030 Hb_003297_030 Hb_010863_080--Hb_003297_030 Hb_000417_180 Hb_000417_180 Hb_010863_080--Hb_000417_180 Hb_000155_190 Hb_000155_190 Hb_010863_080--Hb_000155_190 Hb_168707_030 Hb_168707_030 Hb_010863_080--Hb_168707_030 Hb_000179_210 Hb_000179_210 Hb_010863_080--Hb_000179_210 Hb_004195_160 Hb_004195_160 Hb_010863_080--Hb_004195_160 Hb_000175_450 Hb_000175_450 Hb_000500_040--Hb_000175_450 Hb_001274_020 Hb_001274_020 Hb_000500_040--Hb_001274_020 Hb_002026_100 Hb_002026_100 Hb_000500_040--Hb_002026_100 Hb_000953_010 Hb_000953_010 Hb_000500_040--Hb_000953_010 Hb_000836_360 Hb_000836_360 Hb_000500_040--Hb_000836_360 Hb_000622_310 Hb_000622_310 Hb_000124_020--Hb_000622_310 Hb_000124_020--Hb_010863_080 Hb_000124_020--Hb_000179_210 Hb_000116_470 Hb_000116_470 Hb_000124_020--Hb_000116_470 Hb_005147_090 Hb_005147_090 Hb_000124_020--Hb_005147_090 Hb_000975_290 Hb_000975_290 Hb_002890_280--Hb_000975_290 Hb_007672_010 Hb_007672_010 Hb_002890_280--Hb_007672_010 Hb_001157_030 Hb_001157_030 Hb_002890_280--Hb_001157_030 Hb_005062_070 Hb_005062_070 Hb_002890_280--Hb_005062_070 Hb_009382_020 Hb_009382_020 Hb_002890_280--Hb_009382_020 Hb_000754_060 Hb_000754_060 Hb_002890_280--Hb_000754_060 Hb_001518_020 Hb_001518_020 Hb_000856_340--Hb_001518_020 Hb_000856_340--Hb_000975_290 Hb_007152_020 Hb_007152_020 Hb_000856_340--Hb_007152_020 Hb_000173_170 Hb_000173_170 Hb_000856_340--Hb_000173_170 Hb_000313_380 Hb_000313_380 Hb_000856_340--Hb_000313_380 Hb_027472_180 Hb_027472_180 Hb_000856_340--Hb_027472_180 Hb_004046_010 Hb_004046_010 Hb_003861_080--Hb_004046_010 Hb_000110_160 Hb_000110_160 Hb_003861_080--Hb_000110_160 Hb_001635_100 Hb_001635_100 Hb_003861_080--Hb_001635_100 Hb_007943_080 Hb_007943_080 Hb_003861_080--Hb_007943_080 Hb_000805_090 Hb_000805_090 Hb_003861_080--Hb_000805_090 Hb_003861_080--Hb_001157_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.275 5.62477 1.68451 2.47125 11.3373 11.1919
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.68123 12.9849 17.7713 5.24389 0.678724

CAGE analysis