Hb_000056_120

Information

Type transcription factor
Description TF Family: HB
Location Contig56: 186297-188996
Sequence    

Annotation

kegg
ID rcu:RCOM_0697240
description homeobox protein, putative
nr
ID XP_002520111.1
description homeobox protein, putative [Ricinus communis]
swissprot
ID Q8LC03
description Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 SV=2
trembl
ID B9S292
description Homeobox protein, putative OS=Ricinus communis GN=RCOM_0697240 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein athb-13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48691: 186633-188736 , PASA_asmbl_48692: 187281-187446
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_120 0.0 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
2 Hb_000365_350 0.1256067232 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
3 Hb_000565_020 0.1357756397 - - PREDICTED: alpha-galactosidase 3 [Jatropha curcas]
4 Hb_000156_030 0.1368201928 - - conserved hypothetical protein [Ricinus communis]
5 Hb_061256_030 0.138187031 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
6 Hb_001825_010 0.1472632942 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
7 Hb_000566_140 0.1477228564 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]
8 Hb_002837_070 0.1484547937 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
9 Hb_003540_140 0.1488992349 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
10 Hb_000441_230 0.1490882598 - - unnamed protein product [Coffea canephora]
11 Hb_063716_010 0.1498360761 - - phopholipase d alpha, putative [Ricinus communis]
12 Hb_000376_150 0.1505971962 - - O-acyltransferase WSD1 [Gossypium arboreum]
13 Hb_000050_120 0.1527418468 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
14 Hb_000329_540 0.1533226618 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
15 Hb_012977_010 0.1543769481 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
16 Hb_004724_430 0.1554657322 - - PREDICTED: F-box protein At2g27310 [Jatropha curcas]
17 Hb_107039_010 0.1558056204 - - Quinone oxidoreductase-like protein, chloroplastic [Glycine soja]
18 Hb_002025_140 0.1561181084 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
19 Hb_098315_100 0.1571713782 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
20 Hb_004032_460 0.1593314283 - - -

Gene co-expression network

sample Hb_000056_120 Hb_000056_120 Hb_000365_350 Hb_000365_350 Hb_000056_120--Hb_000365_350 Hb_000565_020 Hb_000565_020 Hb_000056_120--Hb_000565_020 Hb_000156_030 Hb_000156_030 Hb_000056_120--Hb_000156_030 Hb_061256_030 Hb_061256_030 Hb_000056_120--Hb_061256_030 Hb_001825_010 Hb_001825_010 Hb_000056_120--Hb_001825_010 Hb_000566_140 Hb_000566_140 Hb_000056_120--Hb_000566_140 Hb_012807_120 Hb_012807_120 Hb_000365_350--Hb_012807_120 Hb_000050_120 Hb_000050_120 Hb_000365_350--Hb_000050_120 Hb_000088_180 Hb_000088_180 Hb_000365_350--Hb_000088_180 Hb_004032_460 Hb_004032_460 Hb_000365_350--Hb_004032_460 Hb_098315_100 Hb_098315_100 Hb_000365_350--Hb_098315_100 Hb_006478_070 Hb_006478_070 Hb_000365_350--Hb_006478_070 Hb_077219_010 Hb_077219_010 Hb_000565_020--Hb_077219_010 Hb_113216_010 Hb_113216_010 Hb_000565_020--Hb_113216_010 Hb_000565_020--Hb_012807_120 Hb_002837_070 Hb_002837_070 Hb_000565_020--Hb_002837_070 Hb_000565_020--Hb_098315_100 Hb_001140_080 Hb_001140_080 Hb_000565_020--Hb_001140_080 Hb_003540_140 Hb_003540_140 Hb_000156_030--Hb_003540_140 Hb_000329_540 Hb_000329_540 Hb_000156_030--Hb_000329_540 Hb_000161_100 Hb_000161_100 Hb_000156_030--Hb_000161_100 Hb_000156_030--Hb_004032_460 Hb_000441_230 Hb_000441_230 Hb_000156_030--Hb_000441_230 Hb_002897_040 Hb_002897_040 Hb_000156_030--Hb_002897_040 Hb_061256_030--Hb_002837_070 Hb_003226_170 Hb_003226_170 Hb_061256_030--Hb_003226_170 Hb_003673_020 Hb_003673_020 Hb_061256_030--Hb_003673_020 Hb_174865_050 Hb_174865_050 Hb_061256_030--Hb_174865_050 Hb_010189_010 Hb_010189_010 Hb_061256_030--Hb_010189_010 Hb_009421_100 Hb_009421_100 Hb_061256_030--Hb_009421_100 Hb_012977_010 Hb_012977_010 Hb_001825_010--Hb_012977_010 Hb_001825_010--Hb_000365_350 Hb_001523_010 Hb_001523_010 Hb_001825_010--Hb_001523_010 Hb_002149_040 Hb_002149_040 Hb_001825_010--Hb_002149_040 Hb_000416_100 Hb_000416_100 Hb_001825_010--Hb_000416_100 Hb_000363_340 Hb_000363_340 Hb_001825_010--Hb_000363_340 Hb_001348_140 Hb_001348_140 Hb_000566_140--Hb_001348_140 Hb_002025_140 Hb_002025_140 Hb_000566_140--Hb_002025_140 Hb_004724_430 Hb_004724_430 Hb_000566_140--Hb_004724_430 Hb_000566_140--Hb_000565_020 Hb_000732_020 Hb_000732_020 Hb_000566_140--Hb_000732_020 Hb_000165_130 Hb_000165_130 Hb_000566_140--Hb_000165_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
451.97 40.0104 20.9303 113.693 368.625 374.861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
148.038 32.7438 82.4763 12.0969 15.672

CAGE analysis