Hb_000056_130

Information

Type -
Description -
Location Contig56: 199917-212169
Sequence    

Annotation

kegg
ID rcu:RCOM_0697230
description sucrose transport protein, putative
nr
ID CAM33449.1
description Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
swissprot
ID O80605
description Sucrose transport protein SUC3 OS=Arabidopsis thaliana GN=SUC3 PE=1 SV=1
trembl
ID A2VBC6
description Sucrose Transporter 2C OS=Hevea brasiliensis subsp. brasiliensis GN=sut2C PE=2 SV=1
Gene Ontology
ID GO:0005794
description sucrose transporter 2 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48695: 199925-202867 , PASA_asmbl_48696: 211212-211573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_130 0.0 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
2 Hb_002226_080 0.0695066967 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
3 Hb_008511_020 0.0751891422 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
4 Hb_009569_040 0.0801362316 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
5 Hb_002928_090 0.0835257498 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
6 Hb_001157_230 0.0850613807 - - Protein AFR, putative [Ricinus communis]
7 Hb_006810_030 0.0866044051 - - Uncharacterized protein isoform 1 [Theobroma cacao]
8 Hb_000004_020 0.0885076958 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000022_020 0.0895171116 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
10 Hb_008406_180 0.089663242 - - RING/U-box superfamily protein isoform 2 [Theobroma cacao]
11 Hb_002897_090 0.0923848617 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000960_040 0.0933537594 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
13 Hb_000184_070 0.093777807 - - PREDICTED: uncharacterized protein LOC105641537 isoform X1 [Jatropha curcas]
14 Hb_012340_070 0.0940412811 - - Gamma-secretase subunit APH1-like family protein [Populus trichocarpa]
15 Hb_001876_040 0.0949067509 - - PREDICTED: mucin-5B [Jatropha curcas]
16 Hb_000049_020 0.0953082871 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
17 Hb_000004_030 0.0954235088 - - PREDICTED: Niemann-Pick C1 protein [Jatropha curcas]
18 Hb_001491_030 0.0956421427 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
19 Hb_002883_030 0.0958140573 - - PREDICTED: uncharacterized protein LOC105638222 [Jatropha curcas]
20 Hb_001662_100 0.0959598767 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000056_130 Hb_000056_130 Hb_002226_080 Hb_002226_080 Hb_000056_130--Hb_002226_080 Hb_008511_020 Hb_008511_020 Hb_000056_130--Hb_008511_020 Hb_009569_040 Hb_009569_040 Hb_000056_130--Hb_009569_040 Hb_002928_090 Hb_002928_090 Hb_000056_130--Hb_002928_090 Hb_001157_230 Hb_001157_230 Hb_000056_130--Hb_001157_230 Hb_006810_030 Hb_006810_030 Hb_000056_130--Hb_006810_030 Hb_000004_020 Hb_000004_020 Hb_002226_080--Hb_000004_020 Hb_002226_080--Hb_009569_040 Hb_000058_110 Hb_000058_110 Hb_002226_080--Hb_000058_110 Hb_002226_080--Hb_002928_090 Hb_001946_180 Hb_001946_180 Hb_002226_080--Hb_001946_180 Hb_002675_030 Hb_002675_030 Hb_008511_020--Hb_002675_030 Hb_001440_020 Hb_001440_020 Hb_008511_020--Hb_001440_020 Hb_002027_080 Hb_002027_080 Hb_008511_020--Hb_002027_080 Hb_001518_080 Hb_001518_080 Hb_008511_020--Hb_001518_080 Hb_000049_020 Hb_000049_020 Hb_008511_020--Hb_000049_020 Hb_000345_160 Hb_000345_160 Hb_008511_020--Hb_000345_160 Hb_001662_100 Hb_001662_100 Hb_009569_040--Hb_001662_100 Hb_000256_150 Hb_000256_150 Hb_009569_040--Hb_000256_150 Hb_005725_130 Hb_005725_130 Hb_009569_040--Hb_005725_130 Hb_009569_040--Hb_000049_020 Hb_007481_010 Hb_007481_010 Hb_009569_040--Hb_007481_010 Hb_002414_050 Hb_002414_050 Hb_009569_040--Hb_002414_050 Hb_000014_040 Hb_000014_040 Hb_002928_090--Hb_000014_040 Hb_001242_120 Hb_001242_120 Hb_002928_090--Hb_001242_120 Hb_001051_050 Hb_001051_050 Hb_002928_090--Hb_001051_050 Hb_002928_090--Hb_005725_130 Hb_000390_050 Hb_000390_050 Hb_002928_090--Hb_000390_050 Hb_002928_090--Hb_009569_040 Hb_001876_040 Hb_001876_040 Hb_001157_230--Hb_001876_040 Hb_000212_120 Hb_000212_120 Hb_001157_230--Hb_000212_120 Hb_022250_010 Hb_022250_010 Hb_001157_230--Hb_022250_010 Hb_032202_220 Hb_032202_220 Hb_001157_230--Hb_032202_220 Hb_024184_010 Hb_024184_010 Hb_001157_230--Hb_024184_010 Hb_001029_040 Hb_001029_040 Hb_001157_230--Hb_001029_040 Hb_001191_110 Hb_001191_110 Hb_006810_030--Hb_001191_110 Hb_001491_030 Hb_001491_030 Hb_006810_030--Hb_001491_030 Hb_000136_140 Hb_000136_140 Hb_006810_030--Hb_000136_140 Hb_000184_070 Hb_000184_070 Hb_006810_030--Hb_000184_070 Hb_000071_150 Hb_000071_150 Hb_006810_030--Hb_000071_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.68186 2.10878 3.96378 7.68384 3.58625 5.27176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.80623 1.90456 2.55245 3.63887 6.22019

CAGE analysis