Hb_000056_140

Information

Type transcription factor
Description TF Family: bHLH
Location Contig56: 222289-222907
Sequence    

Annotation

kegg
ID vvi:100256731
description transcription factor PRE6
nr
ID XP_002276549.1
description PREDICTED: transcription factor PRE6 [Vitis vinifera]
swissprot
ID Q9LJX1
description Transcription factor PRE5 OS=Arabidopsis thaliana GN=PRE5 PE=1 SV=1
trembl
ID A5BU53
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02030 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh135

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_140 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE6 [Vitis vinifera]
2 Hb_001688_040 0.0033821142 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001946_420 0.0162494634 - - protein with unknown function [Ricinus communis]
4 Hb_092416_020 0.0198117235 - - protein with unknown function [Ricinus communis]
5 Hb_005276_180 0.0293438276 - - hypothetical protein POPTR_0005s23040g [Populus trichocarpa]
6 Hb_031546_010 0.0311044127 - - hypothetical protein JCGZ_21533 [Jatropha curcas]
7 Hb_093084_040 0.0785664853 transcription factor TF Family: LOB hypothetical protein POPTR_0015s09370g [Populus trichocarpa]
8 Hb_041188_010 0.0791410305 - - PREDICTED: O-acyltransferase WSD1-like [Nicotiana tomentosiformis]
9 Hb_025526_110 0.0824071459 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
10 Hb_106677_010 0.0883290504 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
11 Hb_020712_020 0.0910349832 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Elaeis guineensis]
12 Hb_005699_100 0.0971897947 - - hypothetical protein POPTR_0013s12390g [Populus trichocarpa]
13 Hb_000355_020 0.1000290272 - - -
14 Hb_000479_100 0.1005750527 - - Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic [Gossypium arboreum]
15 Hb_001278_010 0.1023347525 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000645_040 0.1083631537 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
17 Hb_000002_190 0.1141003652 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
18 Hb_000003_520 0.1141003652 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
19 Hb_000005_170 0.1141003652 transcription factor TF Family: bHLH PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Jatropha curcas]
20 Hb_000009_230 0.1141003652 - - hypothetical protein POPTR_0007s12290g [Populus trichocarpa]

Gene co-expression network

sample Hb_000056_140 Hb_000056_140 Hb_001688_040 Hb_001688_040 Hb_000056_140--Hb_001688_040 Hb_001946_420 Hb_001946_420 Hb_000056_140--Hb_001946_420 Hb_092416_020 Hb_092416_020 Hb_000056_140--Hb_092416_020 Hb_005276_180 Hb_005276_180 Hb_000056_140--Hb_005276_180 Hb_031546_010 Hb_031546_010 Hb_000056_140--Hb_031546_010 Hb_093084_040 Hb_093084_040 Hb_000056_140--Hb_093084_040 Hb_001688_040--Hb_001946_420 Hb_001688_040--Hb_092416_020 Hb_001688_040--Hb_005276_180 Hb_001688_040--Hb_031546_010 Hb_001688_040--Hb_093084_040 Hb_001946_420--Hb_092416_020 Hb_001946_420--Hb_031546_010 Hb_001946_420--Hb_005276_180 Hb_041188_010 Hb_041188_010 Hb_001946_420--Hb_041188_010 Hb_092416_020--Hb_031546_010 Hb_092416_020--Hb_005276_180 Hb_092416_020--Hb_041188_010 Hb_005276_180--Hb_031546_010 Hb_005699_100 Hb_005699_100 Hb_005276_180--Hb_005699_100 Hb_031546_010--Hb_041188_010 Hb_025526_110 Hb_025526_110 Hb_031546_010--Hb_025526_110 Hb_093084_040--Hb_031546_010 Hb_093084_040--Hb_092416_020 Hb_093084_040--Hb_001946_420 Hb_093084_040--Hb_041188_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 17.8094 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.471551 0

CAGE analysis