Hb_000056_160

Information

Type -
Description -
Location Contig56: 245249-255272
Sequence    

Annotation

kegg
ID rcu:RCOM_0697090
description peptidyl-prolyl cis-trans isomerase, putative (EC:5.2.1.8)
nr
ID XP_012067607.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Jatropha curcas]
swissprot
ID Q8LDR3
description Peptidyl-prolyl cis-trans isomerase CYP23 OS=Arabidopsis thaliana GN=CYP23 PE=2 SV=1
trembl
ID A0A067L9J6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15577 PE=3 SV=1
Gene Ontology
ID GO:0005576
description peptidyl-prolyl cis-trans isomerase cyp23 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48698: 252532-253495 , PASA_asmbl_48699: 245142-255108 , PASA_asmbl_48700: 254363-255089 , PASA_asmbl_48703: 245205-255089
cDNA
(Sanger)
(ID:Location)		 028_I04.ab1: 245507-255108

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_160 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP23 isoform X1 [Jatropha curcas]
2 Hb_000579_070 0.0596656944 - - hypothetical protein CISIN_1g0119542mg, partial [Citrus sinensis]
3 Hb_003687_210 0.0680730347 - - PREDICTED: malate dehydrogenase [Populus euphratica]
4 Hb_000261_210 0.0794606769 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
5 Hb_004064_040 0.0817426119 - - PREDICTED: Down syndrome critical region protein 3 homolog isoform X3 [Jatropha curcas]
6 Hb_000154_050 0.0894609271 - - CMP-sialic acid transporter, putative [Ricinus communis]
7 Hb_001002_060 0.089966962 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
8 Hb_005064_010 0.0907770594 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
9 Hb_000787_060 0.0915652087 - - thioredoxin domain-containing protein, putative [Ricinus communis]
10 Hb_002749_080 0.0922751984 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004096_060 0.1031347061 - - PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X2 [Jatropha curcas]
12 Hb_002351_030 0.1043575455 - - catalytic, putative [Ricinus communis]
13 Hb_000903_010 0.1054613245 - - hypothetical protein JCGZ_23825 [Jatropha curcas]
14 Hb_000608_350 0.1076368258 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
15 Hb_000103_310 0.1081788641 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
16 Hb_000579_060 0.1086451689 - - PREDICTED: uncharacterized protein LOC105633849 isoform X1 [Jatropha curcas]
17 Hb_002942_210 0.1102602978 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
18 Hb_002871_140 0.1108906904 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
19 Hb_007951_040 0.1115914463 - - signal peptidase family protein [Populus trichocarpa]
20 Hb_000497_190 0.111844072 - - sterol isomerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000056_160 Hb_000056_160 Hb_000579_070 Hb_000579_070 Hb_000056_160--Hb_000579_070 Hb_003687_210 Hb_003687_210 Hb_000056_160--Hb_003687_210 Hb_000261_210 Hb_000261_210 Hb_000056_160--Hb_000261_210 Hb_004064_040 Hb_004064_040 Hb_000056_160--Hb_004064_040 Hb_000154_050 Hb_000154_050 Hb_000056_160--Hb_000154_050 Hb_001002_060 Hb_001002_060 Hb_000056_160--Hb_001002_060 Hb_000579_070--Hb_003687_210 Hb_002749_080 Hb_002749_080 Hb_000579_070--Hb_002749_080 Hb_004586_150 Hb_004586_150 Hb_000579_070--Hb_004586_150 Hb_000579_070--Hb_000261_210 Hb_000787_060 Hb_000787_060 Hb_000579_070--Hb_000787_060 Hb_000579_060 Hb_000579_060 Hb_003687_210--Hb_000579_060 Hb_003104_040 Hb_003104_040 Hb_003687_210--Hb_003104_040 Hb_013726_080 Hb_013726_080 Hb_003687_210--Hb_013726_080 Hb_004096_060 Hb_004096_060 Hb_003687_210--Hb_004096_060 Hb_002473_050 Hb_002473_050 Hb_000261_210--Hb_002473_050 Hb_000054_040 Hb_000054_040 Hb_000261_210--Hb_000054_040 Hb_000261_210--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_000261_210--Hb_025668_010 Hb_002351_030 Hb_002351_030 Hb_000261_210--Hb_002351_030 Hb_000371_090 Hb_000371_090 Hb_000261_210--Hb_000371_090 Hb_005064_010 Hb_005064_010 Hb_004064_040--Hb_005064_010 Hb_000836_300 Hb_000836_300 Hb_004064_040--Hb_000836_300 Hb_000903_010 Hb_000903_010 Hb_004064_040--Hb_000903_010 Hb_000160_070 Hb_000160_070 Hb_004064_040--Hb_000160_070 Hb_001227_120 Hb_001227_120 Hb_004064_040--Hb_001227_120 Hb_000154_050--Hb_005064_010 Hb_006588_160 Hb_006588_160 Hb_000154_050--Hb_006588_160 Hb_004013_030 Hb_004013_030 Hb_000154_050--Hb_004013_030 Hb_002837_040 Hb_002837_040 Hb_000154_050--Hb_002837_040 Hb_002871_140 Hb_002871_140 Hb_000154_050--Hb_002871_140 Hb_000154_050--Hb_000261_210 Hb_023313_040 Hb_023313_040 Hb_001002_060--Hb_023313_040 Hb_000362_170 Hb_000362_170 Hb_001002_060--Hb_000362_170 Hb_000737_030 Hb_000737_030 Hb_001002_060--Hb_000737_030 Hb_001002_060--Hb_025668_010 Hb_005895_010 Hb_005895_010 Hb_001002_060--Hb_005895_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9206 7.23771 25.8416 27.2793 20.6391 15.9371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.67696 6.94561 5.30537 14.8516 12.3592

CAGE analysis