Hb_000056_190

Information

Type -
Description -
Location Contig56: 291521-292075
Sequence    

Annotation

kegg
ID tcc:TCM_011746
description hypothetical protein
nr
ID CAH56540.1
description hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID Q5ZGH7
description Putative uncharacterized protein OS=Ricinus communis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_190 0.0 - - hypothetical protein [Ricinus communis]
2 Hb_000330_020 0.0870991445 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
3 Hb_003462_040 0.1201640606 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
4 Hb_000349_200 0.1302723697 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 [Jatropha curcas]
5 Hb_000300_480 0.1368821364 - - hypothetical protein RCOM_1321910 [Ricinus communis]
6 Hb_003680_030 0.1422755558 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
7 Hb_000271_220 0.1432759 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
8 Hb_009222_110 0.1445983746 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
9 Hb_000684_220 0.1535002005 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_019516_060 0.1582646526 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
11 Hb_006925_050 0.1615064823 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
12 Hb_006829_070 0.1628081507 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
13 Hb_004007_070 0.16336281 - - adenylsulfate kinase, putative [Ricinus communis]
14 Hb_012807_150 0.1638327628 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
15 Hb_105033_010 0.1641789083 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X2 [Jatropha curcas]
16 Hb_001789_100 0.1649576357 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000049_270 0.1659953529 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
18 Hb_000603_020 0.1662599289 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
19 Hb_012762_060 0.1663554243 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
20 Hb_030565_050 0.1666991664 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000056_190 Hb_000056_190 Hb_000330_020 Hb_000330_020 Hb_000056_190--Hb_000330_020 Hb_003462_040 Hb_003462_040 Hb_000056_190--Hb_003462_040 Hb_000349_200 Hb_000349_200 Hb_000056_190--Hb_000349_200 Hb_000300_480 Hb_000300_480 Hb_000056_190--Hb_000300_480 Hb_003680_030 Hb_003680_030 Hb_000056_190--Hb_003680_030 Hb_000271_220 Hb_000271_220 Hb_000056_190--Hb_000271_220 Hb_000684_220 Hb_000684_220 Hb_000330_020--Hb_000684_220 Hb_030565_050 Hb_030565_050 Hb_000330_020--Hb_030565_050 Hb_012762_060 Hb_012762_060 Hb_000330_020--Hb_012762_060 Hb_000330_020--Hb_003680_030 Hb_000844_030 Hb_000844_030 Hb_000330_020--Hb_000844_030 Hb_001369_010 Hb_001369_010 Hb_003462_040--Hb_001369_010 Hb_006750_010 Hb_006750_010 Hb_003462_040--Hb_006750_010 Hb_003006_090 Hb_003006_090 Hb_003462_040--Hb_003006_090 Hb_019516_060 Hb_019516_060 Hb_003462_040--Hb_019516_060 Hb_003226_250 Hb_003226_250 Hb_003462_040--Hb_003226_250 Hb_001195_660 Hb_001195_660 Hb_003462_040--Hb_001195_660 Hb_000349_200--Hb_000271_220 Hb_000011_070 Hb_000011_070 Hb_000349_200--Hb_000011_070 Hb_000603_020 Hb_000603_020 Hb_000349_200--Hb_000603_020 Hb_003929_230 Hb_003929_230 Hb_000349_200--Hb_003929_230 Hb_000349_200--Hb_003006_090 Hb_009222_110 Hb_009222_110 Hb_000300_480--Hb_009222_110 Hb_006925_050 Hb_006925_050 Hb_000300_480--Hb_006925_050 Hb_001102_160 Hb_001102_160 Hb_000300_480--Hb_001102_160 Hb_000291_290 Hb_000291_290 Hb_000300_480--Hb_000291_290 Hb_000856_400 Hb_000856_400 Hb_000300_480--Hb_000856_400 Hb_003680_030--Hb_012762_060 Hb_002217_320 Hb_002217_320 Hb_003680_030--Hb_002217_320 Hb_012807_150 Hb_012807_150 Hb_003680_030--Hb_012807_150 Hb_006829_070 Hb_006829_070 Hb_003680_030--Hb_006829_070 Hb_002488_010 Hb_002488_010 Hb_003680_030--Hb_002488_010 Hb_000959_300 Hb_000959_300 Hb_003680_030--Hb_000959_300 Hb_000271_220--Hb_000603_020 Hb_000271_220--Hb_012807_150 Hb_000283_140 Hb_000283_140 Hb_000271_220--Hb_000283_140 Hb_000271_220--Hb_003006_090 Hb_003001_130 Hb_003001_130 Hb_000271_220--Hb_003001_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.58112 18.2467 27.5719 70.0434 8.16909 3.50892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.27374 2.32196 3.08551 1.91417 36.3221

CAGE analysis