Hb_000056_200

Information

Type -
Description -
Location Contig56: 306967-314516
Sequence    

Annotation

kegg
ID pda:103700527
description 40S ribosomal protein S9-2
nr
ID KHG14244.1
description 40S ribosomal S9-2 -like protein [Gossypium arboreum]
swissprot
ID Q9FLF0
description 40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1
trembl
ID A0A0B0NR26
description 40S ribosomal S9-2-like protein OS=Gossypium arboreum GN=F383_10448 PE=3 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s9-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48710: 306978-311101 , PASA_asmbl_48711: 310275-310521 , PASA_asmbl_48712: 308658-309007
cDNA
(Sanger)
(ID:Location)		 003_I14.ab1: 307127-311090 , 008_I04.ab1: 307212-311096 , 022_P05.ab1: 307269-311098 , 034_D20.ab1: 307141-311097 , 042_N05.ab1: 307166-311098 , 048_F17.ab1: 307175-311097 , 050_G14.ab1: 307245-311098 , 051_F13.ab1: 307224-311098 , 052_A14.ab1: 307198-311097

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_200 0.0 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
2 Hb_001821_010 0.0536813602 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
3 Hb_000920_180 0.0563664456 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
4 Hb_003050_080 0.0572936457 - - 40S ribosomal protein S14, putative [Ricinus communis]
5 Hb_000243_030 0.0583921643 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
6 Hb_063716_050 0.059701196 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
7 Hb_002044_080 0.0604005091 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
8 Hb_002226_070 0.0617386723 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
9 Hb_001226_160 0.0631844814 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
10 Hb_002660_080 0.0643642795 - - 60S ribosomal protein L12A [Hevea brasiliensis]
11 Hb_001489_060 0.0666754525 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
12 Hb_003929_250 0.0667530924 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
13 Hb_002609_020 0.0701908346 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]
14 Hb_003001_140 0.0729695068 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
15 Hb_118707_030 0.0737132355 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
16 Hb_002214_040 0.0746063758 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
17 Hb_096563_010 0.0750298467 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
18 Hb_000120_790 0.0751539112 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
19 Hb_000103_560 0.0755929036 - - ADP-ribosylation factor, putative [Ricinus communis]
20 Hb_006541_030 0.0769315079 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]

Gene co-expression network

sample Hb_000056_200 Hb_000056_200 Hb_001821_010 Hb_001821_010 Hb_000056_200--Hb_001821_010 Hb_000920_180 Hb_000920_180 Hb_000056_200--Hb_000920_180 Hb_003050_080 Hb_003050_080 Hb_000056_200--Hb_003050_080 Hb_000243_030 Hb_000243_030 Hb_000056_200--Hb_000243_030 Hb_063716_050 Hb_063716_050 Hb_000056_200--Hb_063716_050 Hb_002044_080 Hb_002044_080 Hb_000056_200--Hb_002044_080 Hb_000815_320 Hb_000815_320 Hb_001821_010--Hb_000815_320 Hb_001105_030 Hb_001105_030 Hb_001821_010--Hb_001105_030 Hb_012725_050 Hb_012725_050 Hb_001821_010--Hb_012725_050 Hb_002609_020 Hb_002609_020 Hb_001821_010--Hb_002609_020 Hb_004735_040 Hb_004735_040 Hb_001821_010--Hb_004735_040 Hb_003929_250 Hb_003929_250 Hb_000920_180--Hb_003929_250 Hb_000656_400 Hb_000656_400 Hb_000920_180--Hb_000656_400 Hb_000120_790 Hb_000120_790 Hb_000920_180--Hb_000120_790 Hb_118707_030 Hb_118707_030 Hb_000920_180--Hb_118707_030 Hb_005993_040 Hb_005993_040 Hb_000920_180--Hb_005993_040 Hb_003050_080--Hb_063716_050 Hb_002686_020 Hb_002686_020 Hb_003050_080--Hb_002686_020 Hb_000832_140 Hb_000832_140 Hb_003050_080--Hb_000832_140 Hb_001489_060 Hb_001489_060 Hb_003050_080--Hb_001489_060 Hb_001540_010 Hb_001540_010 Hb_003050_080--Hb_001540_010 Hb_000243_030--Hb_063716_050 Hb_006541_030 Hb_006541_030 Hb_000243_030--Hb_006541_030 Hb_000398_180 Hb_000398_180 Hb_000243_030--Hb_000398_180 Hb_002226_070 Hb_002226_070 Hb_000243_030--Hb_002226_070 Hb_004440_090 Hb_004440_090 Hb_000243_030--Hb_004440_090 Hb_000103_560 Hb_000103_560 Hb_063716_050--Hb_000103_560 Hb_063716_050--Hb_001489_060 Hb_000529_190 Hb_000529_190 Hb_063716_050--Hb_000529_190 Hb_063716_050--Hb_000832_140 Hb_001604_080 Hb_001604_080 Hb_063716_050--Hb_001604_080 Hb_058999_020 Hb_058999_020 Hb_002044_080--Hb_058999_020 Hb_006502_090 Hb_006502_090 Hb_002044_080--Hb_006502_090 Hb_001242_060 Hb_001242_060 Hb_002044_080--Hb_001242_060 Hb_002044_080--Hb_000120_790 Hb_000085_050 Hb_000085_050 Hb_002044_080--Hb_000085_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
119.63 58.9656 76.0571 61.6824 118.141 152.971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
114.677 214.407 129.678 63.4875 60.6568

CAGE analysis