Hb_000056_220

Information

Type -
Description -
Location Contig56: 351646-353140
Sequence    

Annotation

kegg
ID rcu:RCOM_0835800
description Protein HVA22, putative
nr
ID XP_012067619.1
description PREDICTED: HVA22-like protein c [Jatropha curcas]
swissprot
ID Q9S784
description HVA22-like protein c OS=Arabidopsis thaliana GN=HVA22C PE=2 SV=1
trembl
ID A0A067L9L0
description HVA22-like protein OS=Jatropha curcas GN=JCGZ_15587 PE=3 SV=1
Gene Ontology
ID GO:0009506
description hva22-like protein c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48716: 351745-353033
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_220 0.0 - - PREDICTED: HVA22-like protein c [Jatropha curcas]
2 Hb_006275_010 0.1560907741 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
3 Hb_000471_080 0.1911714019 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
4 Hb_007545_140 0.1931636551 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
5 Hb_003602_070 0.216496297 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
6 Hb_000915_070 0.2213003813 - - ATP binding protein, putative [Ricinus communis]
7 Hb_003893_140 0.2221071836 - - palmitoyl-acyl carrier protein thioesterase [Ricinus communis]
8 Hb_000589_210 0.2337686005 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
9 Hb_000300_590 0.2337891298 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
10 Hb_158092_060 0.2340132259 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
11 Hb_001366_250 0.2367912361 - - PREDICTED: mannan endo-1,4-beta-mannosidase 4-like [Jatropha curcas]
12 Hb_000364_200 0.2376296862 - - o-methyltransferase, putative [Ricinus communis]
13 Hb_001863_200 0.2383959199 - - chloroplast 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Hevea brasiliensis]
14 Hb_029510_110 0.245995761 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
15 Hb_005152_010 0.2484320859 - - hypothetical protein JCGZ_22048 [Jatropha curcas]
16 Hb_000204_030 0.248846035 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
17 Hb_001390_030 0.249821574 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
18 Hb_000256_100 0.2525419929 transcription factor TF Family: ERF PPLZ02 family protein [Populus trichocarpa]
19 Hb_001268_330 0.2535240814 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
20 Hb_001104_200 0.253979221 - - Phytosulfokine 3 precursor, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000056_220 Hb_000056_220 Hb_006275_010 Hb_006275_010 Hb_000056_220--Hb_006275_010 Hb_000471_080 Hb_000471_080 Hb_000056_220--Hb_000471_080 Hb_007545_140 Hb_007545_140 Hb_000056_220--Hb_007545_140 Hb_003602_070 Hb_003602_070 Hb_000056_220--Hb_003602_070 Hb_000915_070 Hb_000915_070 Hb_000056_220--Hb_000915_070 Hb_003893_140 Hb_003893_140 Hb_000056_220--Hb_003893_140 Hb_007943_160 Hb_007943_160 Hb_006275_010--Hb_007943_160 Hb_006275_010--Hb_000915_070 Hb_000120_390 Hb_000120_390 Hb_006275_010--Hb_000120_390 Hb_001206_090 Hb_001206_090 Hb_006275_010--Hb_001206_090 Hb_004976_050 Hb_004976_050 Hb_006275_010--Hb_004976_050 Hb_029510_110 Hb_029510_110 Hb_000471_080--Hb_029510_110 Hb_000614_180 Hb_000614_180 Hb_000471_080--Hb_000614_180 Hb_001366_250 Hb_001366_250 Hb_000471_080--Hb_001366_250 Hb_005000_310 Hb_005000_310 Hb_000471_080--Hb_005000_310 Hb_158092_060 Hb_158092_060 Hb_000471_080--Hb_158092_060 Hb_000140_190 Hb_000140_190 Hb_000471_080--Hb_000140_190 Hb_032225_030 Hb_032225_030 Hb_007545_140--Hb_032225_030 Hb_002597_010 Hb_002597_010 Hb_007545_140--Hb_002597_010 Hb_005152_010 Hb_005152_010 Hb_007545_140--Hb_005152_010 Hb_000589_210 Hb_000589_210 Hb_007545_140--Hb_000589_210 Hb_001369_140 Hb_001369_140 Hb_007545_140--Hb_001369_140 Hb_000380_210 Hb_000380_210 Hb_007545_140--Hb_000380_210 Hb_000300_590 Hb_000300_590 Hb_003602_070--Hb_000300_590 Hb_003602_070--Hb_000915_070 Hb_000580_070 Hb_000580_070 Hb_003602_070--Hb_000580_070 Hb_001678_030 Hb_001678_030 Hb_003602_070--Hb_001678_030 Hb_000181_160 Hb_000181_160 Hb_003602_070--Hb_000181_160 Hb_002304_140 Hb_002304_140 Hb_003602_070--Hb_002304_140 Hb_025254_020 Hb_025254_020 Hb_000915_070--Hb_025254_020 Hb_001959_030 Hb_001959_030 Hb_000915_070--Hb_001959_030 Hb_000098_310 Hb_000098_310 Hb_000915_070--Hb_000098_310 Hb_009823_010 Hb_009823_010 Hb_000915_070--Hb_009823_010 Hb_000915_070--Hb_002597_010 Hb_000915_070--Hb_000580_070 Hb_003893_140--Hb_032225_030 Hb_003893_140--Hb_007545_140 Hb_003893_140--Hb_000915_070 Hb_003893_140--Hb_025254_020 Hb_003893_140--Hb_001369_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.1555 10.6899 8.89125 47.8201 1.55156 1.85069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.2115 10.5984 3.85977 213.443 3.56473

CAGE analysis