Hb_000056_230

Information

Type transcription factor
Description TF Family: TCP
Location Contig56: 358239-359387
Sequence    

Annotation

kegg
ID rcu:RCOM_0835810
description hypothetical protein
nr
ID KDP41181.1
description hypothetical protein JCGZ_15588 [Jatropha curcas]
swissprot
ID Q9C9L2
description Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=2 SV=1
trembl
ID A0A067KY96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15588 PE=4 SV=1
Gene Ontology
ID GO:0006355
description transcription factor tcp15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_230 0.0 transcription factor TF Family: TCP hypothetical protein JCGZ_15588 [Jatropha curcas]
2 Hb_128496_010 0.1478700068 - - unnamed protein product [Vitis vinifera]
3 Hb_000329_420 0.170309352 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
4 Hb_004218_070 0.1775478617 - - annexin [Manihot esculenta]
5 Hb_099046_010 0.1777580981 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
6 Hb_004662_010 0.1797703682 - - Nascent polypeptide-associated complex subunit beta [Medicago truncatula]
7 Hb_008406_140 0.1810873476 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
8 Hb_026447_030 0.1819217971 - - hypothetical protein POPTR_0006s06500g [Populus trichocarpa]
9 Hb_002235_130 0.1821345188 - - conserved hypothetical protein [Ricinus communis]
10 Hb_142751_010 0.1833388928 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002893_020 0.1857030614 - - hypothetical protein JCGZ_21319 [Jatropha curcas]
12 Hb_173178_020 0.1902244273 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
13 Hb_003995_010 0.1902536931 - - -
14 Hb_000886_060 0.1906102875 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
15 Hb_170487_010 0.1906767143 - - -
16 Hb_001279_330 0.1944891286 - - Protein bem46, putative [Ricinus communis]
17 Hb_175612_010 0.1957804093 transcription factor TF Family: MBF1 orf [Ricinus communis]
18 Hb_009693_030 0.1971442891 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_054885_010 0.1977466045 - - -
20 Hb_012977_010 0.2014774808 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]

Gene co-expression network

sample Hb_000056_230 Hb_000056_230 Hb_128496_010 Hb_128496_010 Hb_000056_230--Hb_128496_010 Hb_000329_420 Hb_000329_420 Hb_000056_230--Hb_000329_420 Hb_004218_070 Hb_004218_070 Hb_000056_230--Hb_004218_070 Hb_099046_010 Hb_099046_010 Hb_000056_230--Hb_099046_010 Hb_004662_010 Hb_004662_010 Hb_000056_230--Hb_004662_010 Hb_008406_140 Hb_008406_140 Hb_000056_230--Hb_008406_140 Hb_001916_120 Hb_001916_120 Hb_128496_010--Hb_001916_120 Hb_000365_260 Hb_000365_260 Hb_128496_010--Hb_000365_260 Hb_128496_010--Hb_000329_420 Hb_003598_040 Hb_003598_040 Hb_128496_010--Hb_003598_040 Hb_000258_150 Hb_000258_150 Hb_128496_010--Hb_000258_150 Hb_000215_260 Hb_000215_260 Hb_000329_420--Hb_000215_260 Hb_000329_420--Hb_001916_120 Hb_000056_120 Hb_000056_120 Hb_000329_420--Hb_000056_120 Hb_000252_090 Hb_000252_090 Hb_000329_420--Hb_000252_090 Hb_002265_030 Hb_002265_030 Hb_000329_420--Hb_002265_030 Hb_001279_330 Hb_001279_330 Hb_004218_070--Hb_001279_330 Hb_007668_020 Hb_007668_020 Hb_004218_070--Hb_007668_020 Hb_000213_070 Hb_000213_070 Hb_004218_070--Hb_000213_070 Hb_009913_050 Hb_009913_050 Hb_004218_070--Hb_009913_050 Hb_007757_100 Hb_007757_100 Hb_004218_070--Hb_007757_100 Hb_000199_080 Hb_000199_080 Hb_004218_070--Hb_000199_080 Hb_170487_010 Hb_170487_010 Hb_099046_010--Hb_170487_010 Hb_000317_330 Hb_000317_330 Hb_099046_010--Hb_000317_330 Hb_099046_010--Hb_004662_010 Hb_002253_040 Hb_002253_040 Hb_099046_010--Hb_002253_040 Hb_001565_100 Hb_001565_100 Hb_099046_010--Hb_001565_100 Hb_181320_010 Hb_181320_010 Hb_004662_010--Hb_181320_010 Hb_004241_040 Hb_004241_040 Hb_004662_010--Hb_004241_040 Hb_144898_010 Hb_144898_010 Hb_004662_010--Hb_144898_010 Hb_012305_040 Hb_012305_040 Hb_004662_010--Hb_012305_040 Hb_175612_010 Hb_175612_010 Hb_004662_010--Hb_175612_010 Hb_005217_020 Hb_005217_020 Hb_004662_010--Hb_005217_020 Hb_000197_210 Hb_000197_210 Hb_008406_140--Hb_000197_210 Hb_018954_020 Hb_018954_020 Hb_008406_140--Hb_018954_020 Hb_008406_140--Hb_001279_330 Hb_008406_140--Hb_000199_080 Hb_002159_040 Hb_002159_040 Hb_008406_140--Hb_002159_040 Hb_003716_020 Hb_003716_020 Hb_008406_140--Hb_003716_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.021 2.66894 1.61209 9.34936 10.599 12.2357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.65013 4.53898 1.62248 2.38593 0.485862

CAGE analysis