Hb_000056_260

Information

Type -
Description -
Location Contig56: 398941-406327
Sequence    

Annotation

kegg
ID cic:CICLE_v10033822mg
description hypothetical protein
nr
ID XP_006438673.1
description hypothetical protein CICLE_v10033822mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4SVJ6
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033822mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48724: 399213-402532 , PASA_asmbl_48725: 399108-400636 , PASA_asmbl_48726: 402893-403518 , PASA_asmbl_48727: 404089-404479 , PASA_asmbl_48728: 404904-405744 , PASA_asmbl_48729: 405913-406271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_260 0.0 - - hypothetical protein CICLE_v10033822mg [Citrus clementina]
2 Hb_002445_120 0.0734818793 - - secretory carrier membrane protein, putative [Ricinus communis]
3 Hb_001279_150 0.0738530764 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
4 Hb_000120_670 0.0778116506 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
5 Hb_001935_130 0.0813552298 - - PREDICTED: uncharacterized protein LOC105643176 [Jatropha curcas]
6 Hb_007017_030 0.0818117059 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
7 Hb_143398_010 0.0819903249 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
8 Hb_002271_020 0.082730888 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
9 Hb_000019_030 0.0831106718 - - PREDICTED: V-type proton ATPase subunit C [Gossypium raimondii]
10 Hb_003633_030 0.085207998 - - f-actin capping protein alpha, putative [Ricinus communis]
11 Hb_002473_130 0.0852266397 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
12 Hb_002182_080 0.0864211537 - - 3-5 exonuclease, putative [Ricinus communis]
13 Hb_003777_310 0.0890313727 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000808_280 0.0893564371 - - conserved hypothetical protein [Ricinus communis]
15 Hb_158062_010 0.0907483601 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
16 Hb_000318_290 0.0909822341 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
17 Hb_000291_220 0.091143553 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105638855 [Jatropha curcas]
18 Hb_003108_020 0.0914568497 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
19 Hb_019280_040 0.0925630972 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_001575_090 0.0926060285 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]

Gene co-expression network

sample Hb_000056_260 Hb_000056_260 Hb_002445_120 Hb_002445_120 Hb_000056_260--Hb_002445_120 Hb_001279_150 Hb_001279_150 Hb_000056_260--Hb_001279_150 Hb_000120_670 Hb_000120_670 Hb_000056_260--Hb_000120_670 Hb_001935_130 Hb_001935_130 Hb_000056_260--Hb_001935_130 Hb_007017_030 Hb_007017_030 Hb_000056_260--Hb_007017_030 Hb_143398_010 Hb_143398_010 Hb_000056_260--Hb_143398_010 Hb_003777_310 Hb_003777_310 Hb_002445_120--Hb_003777_310 Hb_000318_290 Hb_000318_290 Hb_002445_120--Hb_000318_290 Hb_001633_130 Hb_001633_130 Hb_002445_120--Hb_001633_130 Hb_044736_010 Hb_044736_010 Hb_002445_120--Hb_044736_010 Hb_000107_200 Hb_000107_200 Hb_002445_120--Hb_000107_200 Hb_003750_050 Hb_003750_050 Hb_001279_150--Hb_003750_050 Hb_000215_110 Hb_000215_110 Hb_001279_150--Hb_000215_110 Hb_005489_060 Hb_005489_060 Hb_001279_150--Hb_005489_060 Hb_001279_150--Hb_007017_030 Hb_001279_150--Hb_000120_670 Hb_002182_080 Hb_002182_080 Hb_001279_150--Hb_002182_080 Hb_000120_670--Hb_003750_050 Hb_000580_180 Hb_000580_180 Hb_000120_670--Hb_000580_180 Hb_003964_070 Hb_003964_070 Hb_000120_670--Hb_003964_070 Hb_000019_030 Hb_000019_030 Hb_000120_670--Hb_000019_030 Hb_000345_240 Hb_000345_240 Hb_000120_670--Hb_000345_240 Hb_000960_060 Hb_000960_060 Hb_001935_130--Hb_000960_060 Hb_002671_100 Hb_002671_100 Hb_001935_130--Hb_002671_100 Hb_001090_040 Hb_001090_040 Hb_001935_130--Hb_001090_040 Hb_158062_010 Hb_158062_010 Hb_001935_130--Hb_158062_010 Hb_024714_100 Hb_024714_100 Hb_001935_130--Hb_024714_100 Hb_002893_080 Hb_002893_080 Hb_007017_030--Hb_002893_080 Hb_008406_190 Hb_008406_190 Hb_007017_030--Hb_008406_190 Hb_001828_190 Hb_001828_190 Hb_007017_030--Hb_001828_190 Hb_003633_030 Hb_003633_030 Hb_007017_030--Hb_003633_030 Hb_015934_070 Hb_015934_070 Hb_007017_030--Hb_015934_070 Hb_002271_020 Hb_002271_020 Hb_143398_010--Hb_002271_020 Hb_010180_010 Hb_010180_010 Hb_143398_010--Hb_010180_010 Hb_009557_070 Hb_009557_070 Hb_143398_010--Hb_009557_070 Hb_002473_130 Hb_002473_130 Hb_143398_010--Hb_002473_130 Hb_000045_090 Hb_000045_090 Hb_143398_010--Hb_000045_090 Hb_000329_030 Hb_000329_030 Hb_143398_010--Hb_000329_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.5279 1.25323 2.09341 4.49029 3.38949 5.97673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.71111 4.33499 3.51796 3.97712 1.76811

CAGE analysis