Hb_000056_300

Information

Type -
Description -
Location Contig56: 423316-428587
Sequence    

Annotation

kegg
ID pop:POPTR_0008s14720g
description POPTRDRAFT_820739; hypothetical protein
nr
ID XP_012067633.1
description PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
swissprot
ID B9DFI7
description Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=2 SV=2
trembl
ID A0A067KYA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15598 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable methyltransferase pmt2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48735: 426157-428005 , PASA_asmbl_48736: 423272-428541 , PASA_asmbl_48737: 424933-425038
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_300 0.0 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
2 Hb_128695_030 0.0646992901 - - heat shock protein, putative [Ricinus communis]
3 Hb_003078_030 0.0726084421 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
4 Hb_005054_310 0.0750830155 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
5 Hb_000836_370 0.0813356373 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
6 Hb_005649_090 0.0861240012 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
7 Hb_005000_300 0.0893846128 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
8 Hb_001009_090 0.0970060516 - - CDK protein [Hevea brasiliensis]
9 Hb_004195_120 0.0977124498 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
10 Hb_000227_310 0.1016086598 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
11 Hb_002942_110 0.1043873908 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]
12 Hb_000163_230 0.105281408 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
13 Hb_001231_080 0.1102302268 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]
14 Hb_096819_010 0.1135283796 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
15 Hb_007017_070 0.1138878601 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
16 Hb_030545_030 0.1143157122 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
17 Hb_003228_030 0.114435181 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
18 Hb_003895_020 0.1169077577 - - PREDICTED: dedicator of cytokinesis protein 7 isoform X2 [Jatropha curcas]
19 Hb_002903_140 0.1169454151 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
20 Hb_001410_130 0.1171229549 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]

Gene co-expression network

sample Hb_000056_300 Hb_000056_300 Hb_128695_030 Hb_128695_030 Hb_000056_300--Hb_128695_030 Hb_003078_030 Hb_003078_030 Hb_000056_300--Hb_003078_030 Hb_005054_310 Hb_005054_310 Hb_000056_300--Hb_005054_310 Hb_000836_370 Hb_000836_370 Hb_000056_300--Hb_000836_370 Hb_005649_090 Hb_005649_090 Hb_000056_300--Hb_005649_090 Hb_005000_300 Hb_005000_300 Hb_000056_300--Hb_005000_300 Hb_178127_010 Hb_178127_010 Hb_128695_030--Hb_178127_010 Hb_001565_020 Hb_001565_020 Hb_128695_030--Hb_001565_020 Hb_002942_110 Hb_002942_110 Hb_128695_030--Hb_002942_110 Hb_128695_030--Hb_005054_310 Hb_128695_030--Hb_000836_370 Hb_000186_200 Hb_000186_200 Hb_003078_030--Hb_000186_200 Hb_000163_230 Hb_000163_230 Hb_003078_030--Hb_000163_230 Hb_001009_090 Hb_001009_090 Hb_003078_030--Hb_001009_090 Hb_003078_030--Hb_005000_300 Hb_003078_030--Hb_000836_370 Hb_005054_310--Hb_000836_370 Hb_003228_030 Hb_003228_030 Hb_005054_310--Hb_003228_030 Hb_000227_310 Hb_000227_310 Hb_005054_310--Hb_000227_310 Hb_001484_100 Hb_001484_100 Hb_005054_310--Hb_001484_100 Hb_000836_370--Hb_005000_300 Hb_001231_080 Hb_001231_080 Hb_000836_370--Hb_001231_080 Hb_000836_370--Hb_001484_100 Hb_004195_120 Hb_004195_120 Hb_005649_090--Hb_004195_120 Hb_005649_090--Hb_001009_090 Hb_002903_140 Hb_002903_140 Hb_005649_090--Hb_002903_140 Hb_003226_110 Hb_003226_110 Hb_005649_090--Hb_003226_110 Hb_030545_030 Hb_030545_030 Hb_005649_090--Hb_030545_030 Hb_000465_080 Hb_000465_080 Hb_005000_300--Hb_000465_080 Hb_005000_300--Hb_001231_080 Hb_005000_300--Hb_005054_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.2453 219.372 108.39 79.9542 64.2943 58.2353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6407 14.5032 29.5483 39.8684 32.5059

CAGE analysis