Hb_000056_340

Information

Type -
Description -
Location Contig56: 455736-457694
Sequence    

Annotation

kegg
ID rcu:RCOM_0836350
description 60S ribosomal protein L34, putative
nr
ID ADR71241.1
description 60S ribosomal protein L34A [Hevea brasiliensis]
swissprot
ID P40590
description 60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1
trembl
ID I3NMK4
description 60S ribosomal protein L34A OS=Hevea brasiliensis GN=RPL34A PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48746: 455810-457719
cDNA
(Sanger)
(ID:Location)		 005_F20.ab1: 455828-457719 , 005_O08.ab1: 455829-457719 , 009_O13.ab1: 455856-457714 , 014_D23.ab1: 450105-457719 , 038_N15.ab1: 455823-457719 , 040_O24.ab1: 455829-457698 , 044_B03.ab1: 455829-457698 , 050_E16.ab1: 455883-457719 , 050_I24.ab1: 455829-457719 , 051_B13.ab1: 455828-457719

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_340 0.0 - - 60S ribosomal protein L34A [Hevea brasiliensis]
2 Hb_007101_150 0.0661832891 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
3 Hb_003018_200 0.0710879066 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
4 Hb_007672_010 0.0743888066 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
5 Hb_001828_090 0.0745806056 - - prohibitin, putative [Ricinus communis]
6 Hb_024835_030 0.0760937729 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
7 Hb_004012_010 0.0775216866 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
8 Hb_001257_080 0.0783382952 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006775_080 0.0785094537 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
10 Hb_023386_080 0.0832805295 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
11 Hb_026198_050 0.0845676122 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
12 Hb_021068_050 0.0845719157 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
13 Hb_000392_270 0.0851223588 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
14 Hb_002529_100 0.0859562487 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
15 Hb_004920_040 0.0866069607 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
16 Hb_000376_050 0.0868564285 - - polyadenylate-binding protein, putative [Ricinus communis]
17 Hb_001951_110 0.0868660891 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
18 Hb_002603_100 0.0874310988 - - ATATH9, putative [Ricinus communis]
19 Hb_002150_080 0.0900890814 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
20 Hb_000866_300 0.0910101107 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]

Gene co-expression network

sample Hb_000056_340 Hb_000056_340 Hb_007101_150 Hb_007101_150 Hb_000056_340--Hb_007101_150 Hb_003018_200 Hb_003018_200 Hb_000056_340--Hb_003018_200 Hb_007672_010 Hb_007672_010 Hb_000056_340--Hb_007672_010 Hb_001828_090 Hb_001828_090 Hb_000056_340--Hb_001828_090 Hb_024835_030 Hb_024835_030 Hb_000056_340--Hb_024835_030 Hb_004012_010 Hb_004012_010 Hb_000056_340--Hb_004012_010 Hb_007101_150--Hb_001828_090 Hb_001512_070 Hb_001512_070 Hb_007101_150--Hb_001512_070 Hb_001257_080 Hb_001257_080 Hb_007101_150--Hb_001257_080 Hb_007101_150--Hb_003018_200 Hb_007741_050 Hb_007741_050 Hb_007101_150--Hb_007741_050 Hb_001863_390 Hb_001863_390 Hb_003018_200--Hb_001863_390 Hb_002603_100 Hb_002603_100 Hb_003018_200--Hb_002603_100 Hb_008453_090 Hb_008453_090 Hb_003018_200--Hb_008453_090 Hb_007101_130 Hb_007101_130 Hb_003018_200--Hb_007101_130 Hb_007672_010--Hb_007101_130 Hb_000376_050 Hb_000376_050 Hb_007672_010--Hb_000376_050 Hb_021650_030 Hb_021650_030 Hb_007672_010--Hb_021650_030 Hb_002890_280 Hb_002890_280 Hb_007672_010--Hb_002890_280 Hb_002078_450 Hb_002078_450 Hb_007672_010--Hb_002078_450 Hb_000221_220 Hb_000221_220 Hb_001828_090--Hb_000221_220 Hb_011360_140 Hb_011360_140 Hb_001828_090--Hb_011360_140 Hb_001379_060 Hb_001379_060 Hb_001828_090--Hb_001379_060 Hb_001828_090--Hb_001512_070 Hb_000684_090 Hb_000684_090 Hb_001828_090--Hb_000684_090 Hb_024835_030--Hb_004012_010 Hb_002762_060 Hb_002762_060 Hb_024835_030--Hb_002762_060 Hb_009711_030 Hb_009711_030 Hb_024835_030--Hb_009711_030 Hb_004920_040 Hb_004920_040 Hb_024835_030--Hb_004920_040 Hb_022250_040 Hb_022250_040 Hb_024835_030--Hb_022250_040 Hb_026198_050 Hb_026198_050 Hb_004012_010--Hb_026198_050 Hb_006775_080 Hb_006775_080 Hb_004012_010--Hb_006775_080 Hb_004012_010--Hb_004920_040 Hb_003185_020 Hb_003185_020 Hb_004012_010--Hb_003185_020 Hb_004012_010--Hb_002762_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1160.97 452.785 255.366 197.046 967.213 712.867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1199.37 1538.2 1015.1 409.935 120.362

CAGE analysis