Hb_000056_350

Information

Type -
Description -
Location Contig56: 485170-488634
Sequence    

Annotation

kegg
ID rcu:RCOM_0836370
description hypothetical protein
nr
ID XP_012067637.1
description PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S8W2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0836370 PE=4 SV=1
Gene Ontology
ID GO:0005840
description PREDICTED: uncharacterized protein LOC105630437

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48747: 485187-486035
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_350 0.0 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
2 Hb_002571_070 0.1071823304 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
3 Hb_000832_280 0.1239441971 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
4 Hb_000181_210 0.1309250411 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
5 Hb_000059_300 0.1387875087 - - caspase, putative [Ricinus communis]
6 Hb_000540_040 0.1463736839 - - PREDICTED: chitinase 2 [Amborella trichopoda]
7 Hb_000002_360 0.1569572639 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
8 Hb_026549_050 0.164104917 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
9 Hb_001049_160 0.1681640609 - - aldose 1-epimerase, putative [Ricinus communis]
10 Hb_001329_270 0.1733867924 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
11 Hb_073171_010 0.1742878495 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
12 Hb_001259_100 0.1763584414 - - chloride channel-like family protein [Populus trichocarpa]
13 Hb_000429_110 0.177429349 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
14 Hb_000465_260 0.1787945513 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
15 Hb_052764_080 0.1799102413 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
16 Hb_002324_040 0.1833925113 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
17 Hb_000692_230 0.1862005858 - - phospholipase d delta, putative [Ricinus communis]
18 Hb_001054_090 0.1865703182 - - Potassium channel SKOR, putative [Ricinus communis]
19 Hb_001486_200 0.1924377694 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
20 Hb_000418_030 0.1948790353 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]

Gene co-expression network

sample Hb_000056_350 Hb_000056_350 Hb_002571_070 Hb_002571_070 Hb_000056_350--Hb_002571_070 Hb_000832_280 Hb_000832_280 Hb_000056_350--Hb_000832_280 Hb_000181_210 Hb_000181_210 Hb_000056_350--Hb_000181_210 Hb_000059_300 Hb_000059_300 Hb_000056_350--Hb_000059_300 Hb_000540_040 Hb_000540_040 Hb_000056_350--Hb_000540_040 Hb_000002_360 Hb_000002_360 Hb_000056_350--Hb_000002_360 Hb_001049_160 Hb_001049_160 Hb_002571_070--Hb_001049_160 Hb_013405_100 Hb_013405_100 Hb_002571_070--Hb_013405_100 Hb_000477_010 Hb_000477_010 Hb_002571_070--Hb_000477_010 Hb_000521_100 Hb_000521_100 Hb_002571_070--Hb_000521_100 Hb_002431_090 Hb_002431_090 Hb_002571_070--Hb_002431_090 Hb_000832_280--Hb_000181_210 Hb_001287_060 Hb_001287_060 Hb_000832_280--Hb_001287_060 Hb_004324_030 Hb_004324_030 Hb_000832_280--Hb_004324_030 Hb_000832_280--Hb_000002_360 Hb_026549_050 Hb_026549_050 Hb_000832_280--Hb_026549_050 Hb_000181_210--Hb_026549_050 Hb_042509_020 Hb_042509_020 Hb_000181_210--Hb_042509_020 Hb_000181_210--Hb_004324_030 Hb_001922_060 Hb_001922_060 Hb_000181_210--Hb_001922_060 Hb_001486_200 Hb_001486_200 Hb_000059_300--Hb_001486_200 Hb_005779_030 Hb_005779_030 Hb_000059_300--Hb_005779_030 Hb_009646_010 Hb_009646_010 Hb_000059_300--Hb_009646_010 Hb_001341_200 Hb_001341_200 Hb_000059_300--Hb_001341_200 Hb_000059_300--Hb_000181_210 Hb_000020_030 Hb_000020_030 Hb_000540_040--Hb_000020_030 Hb_000540_040--Hb_000181_210 Hb_025432_010 Hb_025432_010 Hb_000540_040--Hb_025432_010 Hb_000540_040--Hb_026549_050 Hb_002324_040 Hb_002324_040 Hb_000540_040--Hb_002324_040 Hb_012727_010 Hb_012727_010 Hb_000540_040--Hb_012727_010 Hb_000002_360--Hb_026549_050 Hb_000866_320 Hb_000866_320 Hb_000002_360--Hb_000866_320 Hb_001433_160 Hb_001433_160 Hb_000002_360--Hb_001433_160 Hb_003387_050 Hb_003387_050 Hb_000002_360--Hb_003387_050 Hb_000002_360--Hb_001922_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0927548 6.8482 1.47071 7.79364 0.0576024 0.00649767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07968 0.982342 0.531905 4.62171 2.06181

CAGE analysis