Hb_000057_010

Information

Type -
Description -
Location Contig57: 30747-71518
Sequence    

Annotation

kegg
ID rcu:RCOM_0920170
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012076377.1
description PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
swissprot
ID Q8RXV3
description Probable protein phosphatase 2C 59 OS=Arabidopsis thaliana GN=WIN2 PE=1 SV=1
trembl
ID A0A067KEP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07049 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable protein phosphatase 2c 59

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000057_010 0.0 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
2 Hb_005218_070 0.1241781019 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
3 Hb_002671_110 0.1268460421 - - PREDICTED: remorin-like [Jatropha curcas]
4 Hb_009515_010 0.132852109 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
5 Hb_007163_020 0.1333396656 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_004136_050 0.1342632497 - - -
7 Hb_000334_250 0.1345494763 - - Polygalacturonase precursor, putative [Ricinus communis]
8 Hb_005228_170 0.1346628211 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
9 Hb_005663_050 0.1353367239 - - amino acid transporter, putative [Ricinus communis]
10 Hb_002204_030 0.1389241824 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
11 Hb_007328_040 0.1413519653 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 [Nelumbo nucifera]
12 Hb_003119_070 0.1428230632 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
13 Hb_000302_060 0.1433228927 - - unnamed protein product [Vitis vinifera]
14 Hb_001283_010 0.1445391058 transcription factor TF Family: LOB LOB domain-containing protein 15 [Populus tremula x Populus tremuloides]
15 Hb_166813_010 0.1453617336 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
16 Hb_012762_070 0.1503299213 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
17 Hb_002003_020 0.1504174507 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
18 Hb_001640_020 0.1507566512 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Jatropha curcas]
19 Hb_001638_110 0.1538254806 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002475_020 0.1539583614 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000057_010 Hb_000057_010 Hb_005218_070 Hb_005218_070 Hb_000057_010--Hb_005218_070 Hb_002671_110 Hb_002671_110 Hb_000057_010--Hb_002671_110 Hb_009515_010 Hb_009515_010 Hb_000057_010--Hb_009515_010 Hb_007163_020 Hb_007163_020 Hb_000057_010--Hb_007163_020 Hb_004136_050 Hb_004136_050 Hb_000057_010--Hb_004136_050 Hb_000334_250 Hb_000334_250 Hb_000057_010--Hb_000334_250 Hb_002204_030 Hb_002204_030 Hb_005218_070--Hb_002204_030 Hb_005228_170 Hb_005228_170 Hb_005218_070--Hb_005228_170 Hb_000302_060 Hb_000302_060 Hb_005218_070--Hb_000302_060 Hb_002475_020 Hb_002475_020 Hb_005218_070--Hb_002475_020 Hb_005218_070--Hb_009515_010 Hb_005218_070--Hb_002671_110 Hb_002671_110--Hb_005228_170 Hb_000238_060 Hb_000238_060 Hb_002671_110--Hb_000238_060 Hb_000237_150 Hb_000237_150 Hb_002671_110--Hb_000237_150 Hb_001405_100 Hb_001405_100 Hb_002671_110--Hb_001405_100 Hb_002081_040 Hb_002081_040 Hb_002671_110--Hb_002081_040 Hb_009515_010--Hb_002204_030 Hb_009515_010--Hb_000334_250 Hb_009515_010--Hb_000302_060 Hb_000608_080 Hb_000608_080 Hb_009515_010--Hb_000608_080 Hb_000141_230 Hb_000141_230 Hb_009515_010--Hb_000141_230 Hb_007328_040 Hb_007328_040 Hb_007163_020--Hb_007328_040 Hb_007163_020--Hb_002671_110 Hb_001640_020 Hb_001640_020 Hb_007163_020--Hb_001640_020 Hb_002843_010 Hb_002843_010 Hb_007163_020--Hb_002843_010 Hb_007163_020--Hb_005218_070 Hb_001283_010 Hb_001283_010 Hb_004136_050--Hb_001283_010 Hb_001863_460 Hb_001863_460 Hb_004136_050--Hb_001863_460 Hb_002003_020 Hb_002003_020 Hb_004136_050--Hb_002003_020 Hb_017866_020 Hb_017866_020 Hb_004136_050--Hb_017866_020 Hb_005663_050 Hb_005663_050 Hb_004136_050--Hb_005663_050 Hb_000334_250--Hb_002204_030 Hb_000334_250--Hb_000302_060 Hb_000334_250--Hb_005218_070 Hb_000472_030 Hb_000472_030 Hb_000334_250--Hb_000472_030 Hb_000334_250--Hb_005228_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0126755 0.247721 0.00960197 0.132586 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0108829 0.555837 0

CAGE analysis