Hb_000057_030

Information

Type -
Description -
Location Contig57: 91232-99489
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID O65530
description Proline-rich receptor-like protein kinase PERK14 OS=Arabidopsis thaliana GN=PERK14 PE=2 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000057_030 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_002200_010 0.0004843918 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
3 Hb_000286_250 0.002193861 desease resistance Gene Name: NB-ARC -
4 Hb_170761_010 0.0027810725 - - PREDICTED: uncharacterized protein LOC105787794 [Gossypium raimondii]
5 Hb_002081_250 0.0028809081 - - hypothetical protein POPTR_0009s08940g [Populus trichocarpa]
6 Hb_110822_020 0.0034383087 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
7 Hb_011495_020 0.0121256411 - - Pectinesterase-2 precursor, putative [Ricinus communis]
8 Hb_021931_030 0.0160008493 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
9 Hb_161981_020 0.0211648896 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_006124_010 0.027877595 - - -
11 Hb_176138_010 0.0401225448 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
12 Hb_006810_080 0.040361603 - - hypothetical protein EUGRSUZ_C015472, partial [Eucalyptus grandis]
13 Hb_180483_010 0.0434812511 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_005780_010 0.0440649543 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
15 Hb_169426_010 0.044357053 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_022693_100 0.0453111505 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
17 Hb_000329_410 0.0457049937 - - Beta-expansin 3 precursor, putative [Ricinus communis]
18 Hb_000866_480 0.0461862328 - - -
19 Hb_000905_140 0.0491887955 - - PREDICTED: protein gamma response 1 isoform X2 [Jatropha curcas]
20 Hb_002997_010 0.0509350449 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]

Gene co-expression network

sample Hb_000057_030 Hb_000057_030 Hb_002200_010 Hb_002200_010 Hb_000057_030--Hb_002200_010 Hb_000286_250 Hb_000286_250 Hb_000057_030--Hb_000286_250 Hb_170761_010 Hb_170761_010 Hb_000057_030--Hb_170761_010 Hb_002081_250 Hb_002081_250 Hb_000057_030--Hb_002081_250 Hb_110822_020 Hb_110822_020 Hb_000057_030--Hb_110822_020 Hb_011495_020 Hb_011495_020 Hb_000057_030--Hb_011495_020 Hb_002200_010--Hb_000286_250 Hb_002200_010--Hb_170761_010 Hb_002200_010--Hb_002081_250 Hb_002200_010--Hb_110822_020 Hb_002200_010--Hb_011495_020 Hb_000286_250--Hb_170761_010 Hb_000286_250--Hb_002081_250 Hb_000286_250--Hb_110822_020 Hb_021931_030 Hb_021931_030 Hb_000286_250--Hb_021931_030 Hb_170761_010--Hb_002081_250 Hb_170761_010--Hb_110822_020 Hb_170761_010--Hb_021931_030 Hb_002081_250--Hb_110822_020 Hb_002081_250--Hb_021931_030 Hb_110822_020--Hb_021931_030 Hb_011495_020--Hb_000286_250 Hb_011495_020--Hb_170761_010 Hb_011495_020--Hb_002081_250 Hb_011495_020--Hb_110822_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0742024 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.275085 0

CAGE analysis