Hb_000057_050

Information

Type -
Description -
Location Contig57: 131534-136048
Sequence    

Annotation

kegg
ID -
description -
nr
ID KGN44044.1
description hypothetical protein Csa_7G132920 [Cucumis sativus]
swissprot
ID -
description -
trembl
ID A0A0A0K549
description Uncharacterized protein OS=Cucumis sativus GN=Csa_7G132920 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49290: 135510-136249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000057_050 0.0 - - hypothetical protein Csa_7G132920 [Cucumis sativus]
2 Hb_048141_020 0.1194535218 - - tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]
3 Hb_023278_010 0.1281130375 - - Chaperone protein DnaJ [Glycine soja]
4 Hb_005527_030 0.1354481302 - - PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Jatropha curcas]
5 Hb_000134_310 0.1473720281 - - PREDICTED: protein gamma response 1 isoform X1 [Jatropha curcas]
6 Hb_003388_030 0.1485296081 - - PREDICTED: uncharacterized protein LOC105649746 isoform X1 [Jatropha curcas]
7 Hb_000170_190 0.151298855 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
8 Hb_000454_190 0.1539637852 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
9 Hb_005470_020 0.1552498391 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
10 Hb_001009_100 0.155262557 - - -
11 Hb_001489_050 0.1580915849 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
12 Hb_011931_060 0.1586963308 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Jatropha curcas]
13 Hb_153533_010 0.160663648 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X3 [Jatropha curcas]
14 Hb_006445_010 0.1625003922 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
15 Hb_000816_100 0.1635676081 - - PREDICTED: APO protein 1, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_003206_020 0.1658230679 - - PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X2 [Vitis vinifera]
17 Hb_067776_020 0.1678792148 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
18 Hb_008595_010 0.1680002883 - - PREDICTED: pentatricopeptide repeat-containing protein At1g06710, mitochondrial [Jatropha curcas]
19 Hb_041290_010 0.1709646198 - - thioredoxin family protein [Populus trichocarpa]
20 Hb_007317_140 0.1712383733 - - expressed protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000057_050 Hb_000057_050 Hb_048141_020 Hb_048141_020 Hb_000057_050--Hb_048141_020 Hb_023278_010 Hb_023278_010 Hb_000057_050--Hb_023278_010 Hb_005527_030 Hb_005527_030 Hb_000057_050--Hb_005527_030 Hb_000134_310 Hb_000134_310 Hb_000057_050--Hb_000134_310 Hb_003388_030 Hb_003388_030 Hb_000057_050--Hb_003388_030 Hb_000170_190 Hb_000170_190 Hb_000057_050--Hb_000170_190 Hb_000816_100 Hb_000816_100 Hb_048141_020--Hb_000816_100 Hb_048141_020--Hb_023278_010 Hb_005470_020 Hb_005470_020 Hb_048141_020--Hb_005470_020 Hb_000015_100 Hb_000015_100 Hb_048141_020--Hb_000015_100 Hb_001489_050 Hb_001489_050 Hb_048141_020--Hb_001489_050 Hb_011931_060 Hb_011931_060 Hb_048141_020--Hb_011931_060 Hb_023278_010--Hb_000816_100 Hb_000076_130 Hb_000076_130 Hb_023278_010--Hb_000076_130 Hb_006915_070 Hb_006915_070 Hb_023278_010--Hb_006915_070 Hb_006445_010 Hb_006445_010 Hb_023278_010--Hb_006445_010 Hb_000544_010 Hb_000544_010 Hb_023278_010--Hb_000544_010 Hb_008595_010 Hb_008595_010 Hb_005527_030--Hb_008595_010 Hb_000347_570 Hb_000347_570 Hb_005527_030--Hb_000347_570 Hb_005527_030--Hb_000170_190 Hb_011512_060 Hb_011512_060 Hb_005527_030--Hb_011512_060 Hb_000037_110 Hb_000037_110 Hb_005527_030--Hb_000037_110 Hb_000010_180 Hb_000010_180 Hb_005527_030--Hb_000010_180 Hb_003440_060 Hb_003440_060 Hb_000134_310--Hb_003440_060 Hb_000665_160 Hb_000665_160 Hb_000134_310--Hb_000665_160 Hb_006117_040 Hb_006117_040 Hb_000134_310--Hb_006117_040 Hb_002893_070 Hb_002893_070 Hb_000134_310--Hb_002893_070 Hb_000723_100 Hb_000723_100 Hb_000134_310--Hb_000723_100 Hb_000080_120 Hb_000080_120 Hb_000134_310--Hb_000080_120 Hb_001009_100 Hb_001009_100 Hb_003388_030--Hb_001009_100 Hb_067776_020 Hb_067776_020 Hb_003388_030--Hb_067776_020 Hb_000384_080 Hb_000384_080 Hb_003388_030--Hb_000384_080 Hb_004987_070 Hb_004987_070 Hb_003388_030--Hb_004987_070 Hb_000300_120 Hb_000300_120 Hb_003388_030--Hb_000300_120 Hb_003388_030--Hb_005470_020 Hb_002601_130 Hb_002601_130 Hb_000170_190--Hb_002601_130 Hb_002276_060 Hb_002276_060 Hb_000170_190--Hb_002276_060 Hb_000300_580 Hb_000300_580 Hb_000170_190--Hb_000300_580 Hb_000170_190--Hb_000010_180 Hb_008489_020 Hb_008489_020 Hb_000170_190--Hb_008489_020 Hb_000768_190 Hb_000768_190 Hb_000170_190--Hb_000768_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.23417 0.799408 1.02254 0.691692 4.03175 3.19748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.83714 0.903128 0.668245 1.81264 3.93814

CAGE analysis