Hb_000057_060

Information

Type -
Description -
Location Contig57: 138968-147410
Sequence    

Annotation

kegg
ID rcu:RCOM_1494430
description hypothetical protein
nr
ID XP_012073356.1
description PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
swissprot
ID Q8C080
description Sorting nexin-16 OS=Mus musculus GN=Snx16 PE=1 SV=2
trembl
ID B9RQN0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1494430 PE=4 SV=1
Gene Ontology
ID GO:0035091
description phox-associated - nexin isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49291: 138874-147537 , PASA_asmbl_49292: 138874-139539
cDNA
(Sanger)
(ID:Location)		 015_A17.ab1: 138923-139508 , 036_A23.ab1: 138911-139494 , 038_D10.ab1: 138922-139537 , 049_E18.ab1: 138911-139492

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000057_060 0.0 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
2 Hb_001433_170 0.0626388488 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
3 Hb_009510_030 0.0682867836 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
4 Hb_003404_030 0.0696836151 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
5 Hb_000771_140 0.070595299 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
6 Hb_127979_010 0.0706645782 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
7 Hb_002506_010 0.0725116588 - - choline transporter-related family protein [Populus trichocarpa]
8 Hb_026048_090 0.0745572275 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000387_080 0.0756102511 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
10 Hb_000599_120 0.0767505621 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
11 Hb_000696_110 0.0780233699 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
12 Hb_004126_010 0.0823723642 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
13 Hb_162275_010 0.0837614084 - - -
14 Hb_011174_070 0.0859750888 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
15 Hb_000984_180 0.0874751598 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]
16 Hb_026048_100 0.0913623015 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
17 Hb_000700_090 0.0919398902 - - protein with unknown function [Ricinus communis]
18 Hb_002391_110 0.0926559578 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
19 Hb_010174_130 0.0932480027 - - PREDICTED: regulator of G-protein signaling 1 [Jatropha curcas]
20 Hb_114684_020 0.0935893136 - - beta-1,3-glucanase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000057_060 Hb_000057_060 Hb_001433_170 Hb_001433_170 Hb_000057_060--Hb_001433_170 Hb_009510_030 Hb_009510_030 Hb_000057_060--Hb_009510_030 Hb_003404_030 Hb_003404_030 Hb_000057_060--Hb_003404_030 Hb_000771_140 Hb_000771_140 Hb_000057_060--Hb_000771_140 Hb_127979_010 Hb_127979_010 Hb_000057_060--Hb_127979_010 Hb_002506_010 Hb_002506_010 Hb_000057_060--Hb_002506_010 Hb_001433_170--Hb_127979_010 Hb_000179_250 Hb_000179_250 Hb_001433_170--Hb_000179_250 Hb_000176_140 Hb_000176_140 Hb_001433_170--Hb_000176_140 Hb_026048_090 Hb_026048_090 Hb_001433_170--Hb_026048_090 Hb_011609_190 Hb_011609_190 Hb_001433_170--Hb_011609_190 Hb_004126_010 Hb_004126_010 Hb_009510_030--Hb_004126_010 Hb_009510_030--Hb_002506_010 Hb_009510_030--Hb_026048_090 Hb_009510_030--Hb_000771_140 Hb_003001_030 Hb_003001_030 Hb_009510_030--Hb_003001_030 Hb_003404_030--Hb_002506_010 Hb_003404_030--Hb_127979_010 Hb_003404_030--Hb_009510_030 Hb_176022_020 Hb_176022_020 Hb_003404_030--Hb_176022_020 Hb_010174_130 Hb_010174_130 Hb_003404_030--Hb_010174_130 Hb_005245_090 Hb_005245_090 Hb_000771_140--Hb_005245_090 Hb_000771_140--Hb_026048_090 Hb_000771_140--Hb_001433_170 Hb_000387_080 Hb_000387_080 Hb_000771_140--Hb_000387_080 Hb_127979_010--Hb_000176_140 Hb_002391_110 Hb_002391_110 Hb_127979_010--Hb_002391_110 Hb_127979_010--Hb_026048_090 Hb_001017_090 Hb_001017_090 Hb_002506_010--Hb_001017_090 Hb_002506_010--Hb_010174_130 Hb_002506_010--Hb_000387_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
162.399 18.1412 9.10786 12.5958 177.551 189.653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
138.063 88.0377 151.702 31.4222 15.6691

CAGE analysis