Hb_000057_070

Information

Type -
Description -
Location Contig57: 149610-150727
Sequence    

Annotation

kegg
ID cmo:103500584
description 60S ribosomal protein L37-3-like
nr
ID XP_004141772.1
description PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
swissprot
ID Q8LEM8
description 60S ribosomal protein L37-3 OS=Arabidopsis thaliana GN=RPL37C PE=3 SV=1
trembl
ID A0A0A0K941
description Ribosomal protein L37 OS=Cucumis sativus GN=Csa_7G446890 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l37-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49293: 149300-150779
cDNA
(Sanger)
(ID:Location)		 006_E23.ab1: 149375-150778 , 046_C19.ab1: 149398-150783 , 050_C02.ab1: 149430-150770

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000057_070 0.0 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
2 Hb_001538_120 0.0664396906 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
3 Hb_000545_150 0.0707426808 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
4 Hb_012573_070 0.0746971059 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004052_020 0.0774726891 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
6 Hb_000526_150 0.0868062694 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
7 Hb_012753_230 0.0880630881 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
8 Hb_000798_030 0.0897354903 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
9 Hb_001818_020 0.0898191157 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
10 Hb_002893_060 0.0899154274 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
11 Hb_003528_060 0.0931622516 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
12 Hb_003018_120 0.0941394955 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
13 Hb_003058_070 0.0960331246 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
14 Hb_175215_010 0.0962329207 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
15 Hb_000465_060 0.0966343049 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
16 Hb_003927_140 0.1004297358 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
17 Hb_002311_320 0.1031068898 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
18 Hb_182305_020 0.103152615 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
19 Hb_000948_210 0.1037576952 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
20 Hb_010261_060 0.1042616463 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_000057_070 Hb_000057_070 Hb_001538_120 Hb_001538_120 Hb_000057_070--Hb_001538_120 Hb_000545_150 Hb_000545_150 Hb_000057_070--Hb_000545_150 Hb_012573_070 Hb_012573_070 Hb_000057_070--Hb_012573_070 Hb_004052_020 Hb_004052_020 Hb_000057_070--Hb_004052_020 Hb_000526_150 Hb_000526_150 Hb_000057_070--Hb_000526_150 Hb_012753_230 Hb_012753_230 Hb_000057_070--Hb_012753_230 Hb_003528_060 Hb_003528_060 Hb_001538_120--Hb_003528_060 Hb_001538_120--Hb_000545_150 Hb_001538_120--Hb_012573_070 Hb_001818_020 Hb_001818_020 Hb_001538_120--Hb_001818_020 Hb_013405_090 Hb_013405_090 Hb_001538_120--Hb_013405_090 Hb_000545_150--Hb_012573_070 Hb_000545_150--Hb_001818_020 Hb_000465_060 Hb_000465_060 Hb_000545_150--Hb_000465_060 Hb_000317_340 Hb_000317_340 Hb_000545_150--Hb_000317_340 Hb_032202_090 Hb_032202_090 Hb_000545_150--Hb_032202_090 Hb_001638_260 Hb_001638_260 Hb_000545_150--Hb_001638_260 Hb_012573_070--Hb_003528_060 Hb_002518_050 Hb_002518_050 Hb_012573_070--Hb_002518_050 Hb_000926_300 Hb_000926_300 Hb_012573_070--Hb_000926_300 Hb_001314_100 Hb_001314_100 Hb_012573_070--Hb_001314_100 Hb_003683_110 Hb_003683_110 Hb_012573_070--Hb_003683_110 Hb_004052_020--Hb_012753_230 Hb_003058_080 Hb_003058_080 Hb_004052_020--Hb_003058_080 Hb_004052_020--Hb_012573_070 Hb_002900_160 Hb_002900_160 Hb_004052_020--Hb_002900_160 Hb_000948_210 Hb_000948_210 Hb_004052_020--Hb_000948_210 Hb_001269_270 Hb_001269_270 Hb_000526_150--Hb_001269_270 Hb_000526_150--Hb_001638_260 Hb_009851_100 Hb_009851_100 Hb_000526_150--Hb_009851_100 Hb_000526_150--Hb_000545_150 Hb_000634_050 Hb_000634_050 Hb_000526_150--Hb_000634_050 Hb_000526_150--Hb_001818_020 Hb_002259_070 Hb_002259_070 Hb_012753_230--Hb_002259_070 Hb_012753_230--Hb_000948_210 Hb_019516_100 Hb_019516_100 Hb_012753_230--Hb_019516_100 Hb_012753_230--Hb_001538_120 Hb_007944_040 Hb_007944_040 Hb_012753_230--Hb_007944_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
419.559 111.52 280.504 137.896 346.099 529.8
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
765.678 1178.7 249.498 201.309 90.905

CAGE analysis