Hb_000057_080

Information

Type -
Description -
Location Contig57: 165277-170289
Sequence    

Annotation

kegg
ID pop:POPTR_0001s18290g
description POPTRDRAFT_797535; hypothetical protein
nr
ID XP_012073350.1
description PREDICTED: probable ATP-dependent RNA helicase DDX11 [Jatropha curcas]
swissprot
ID A8MPP1
description Putative ATP-dependent RNA helicase DDX11-like protein 8 OS=Homo sapiens GN=DDX11L8 PE=1 SV=1
trembl
ID A0A067KZJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06285 PE=4 SV=1
Gene Ontology
ID GO:0003677
description probable atp-dependent rna helicase ddx11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000057_080 0.0 - - PREDICTED: probable ATP-dependent RNA helicase DDX11 [Jatropha curcas]
2 Hb_006922_090 0.1549803481 - - PREDICTED: interaptin [Jatropha curcas]
3 Hb_030944_010 0.1735716407 - - PREDICTED: uncharacterized protein LOC105633455 [Jatropha curcas]
4 Hb_001287_060 0.1759893205 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
5 Hb_000139_140 0.1805737056 - - Acyl-CoA synthetase [Ricinus communis]
6 Hb_001366_060 0.1820374946 - - -
7 Hb_001022_050 0.1829441687 - - hypothetical protein POPTR_0016s07780g [Populus trichocarpa]
8 Hb_000648_050 0.1863579336 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
9 Hb_002027_030 0.1888045774 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000059_300 0.1907887934 - - caspase, putative [Ricinus communis]
11 Hb_000270_180 0.196765183 - - PREDICTED: HIPL1 protein-like [Jatropha curcas]
12 Hb_027380_190 0.1969845531 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
13 Hb_004495_020 0.1977767557 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_004195_090 0.1979295283 - - PREDICTED: probable mitochondrial chaperone bcs1 [Jatropha curcas]
15 Hb_001341_200 0.2002766192 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
16 Hb_005618_090 0.2034011907 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA20, putative [Ricinus communis]
17 Hb_009646_010 0.2060745026 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
18 Hb_128589_010 0.2069989064 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
19 Hb_012807_130 0.2105873934 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
20 Hb_000339_020 0.2109168827 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_000057_080 Hb_000057_080 Hb_006922_090 Hb_006922_090 Hb_000057_080--Hb_006922_090 Hb_030944_010 Hb_030944_010 Hb_000057_080--Hb_030944_010 Hb_001287_060 Hb_001287_060 Hb_000057_080--Hb_001287_060 Hb_000139_140 Hb_000139_140 Hb_000057_080--Hb_000139_140 Hb_001366_060 Hb_001366_060 Hb_000057_080--Hb_001366_060 Hb_001022_050 Hb_001022_050 Hb_000057_080--Hb_001022_050 Hb_006922_090--Hb_001366_060 Hb_000824_050 Hb_000824_050 Hb_006922_090--Hb_000824_050 Hb_012362_030 Hb_012362_030 Hb_006922_090--Hb_012362_030 Hb_000120_230 Hb_000120_230 Hb_006922_090--Hb_000120_230 Hb_029510_100 Hb_029510_100 Hb_006922_090--Hb_029510_100 Hb_019280_020 Hb_019280_020 Hb_006922_090--Hb_019280_020 Hb_004195_090 Hb_004195_090 Hb_030944_010--Hb_004195_090 Hb_000059_300 Hb_000059_300 Hb_030944_010--Hb_000059_300 Hb_000832_280 Hb_000832_280 Hb_030944_010--Hb_000832_280 Hb_001341_200 Hb_001341_200 Hb_030944_010--Hb_001341_200 Hb_000856_050 Hb_000856_050 Hb_030944_010--Hb_000856_050 Hb_001287_060--Hb_000832_280 Hb_000216_050 Hb_000216_050 Hb_001287_060--Hb_000216_050 Hb_004324_030 Hb_004324_030 Hb_001287_060--Hb_004324_030 Hb_000181_210 Hb_000181_210 Hb_001287_060--Hb_000181_210 Hb_001456_050 Hb_001456_050 Hb_001287_060--Hb_001456_050 Hb_001922_060 Hb_001922_060 Hb_001287_060--Hb_001922_060 Hb_000220_110 Hb_000220_110 Hb_000139_140--Hb_000220_110 Hb_003227_010 Hb_003227_010 Hb_000139_140--Hb_003227_010 Hb_001014_190 Hb_001014_190 Hb_000139_140--Hb_001014_190 Hb_004495_020 Hb_004495_020 Hb_000139_140--Hb_004495_020 Hb_000009_140 Hb_000009_140 Hb_000139_140--Hb_000009_140 Hb_009646_010 Hb_009646_010 Hb_000139_140--Hb_009646_010 Hb_001366_060--Hb_001014_190 Hb_001366_060--Hb_009646_010 Hb_005970_010 Hb_005970_010 Hb_001366_060--Hb_005970_010 Hb_010872_040 Hb_010872_040 Hb_001366_060--Hb_010872_040 Hb_001140_360 Hb_001140_360 Hb_001366_060--Hb_001140_360 Hb_023278_030 Hb_023278_030 Hb_001022_050--Hb_023278_030 Hb_127416_010 Hb_127416_010 Hb_001022_050--Hb_127416_010 Hb_000005_340 Hb_000005_340 Hb_001022_050--Hb_000005_340 Hb_000002_350 Hb_000002_350 Hb_001022_050--Hb_000002_350 Hb_019863_030 Hb_019863_030 Hb_001022_050--Hb_019863_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00687828 0.217568 0.226812 0.454697 0.0064372 0.025233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.202827 0.0736647 0.117289 0.394599 0.0523222

CAGE analysis