Hb_000057_100

Information

Type -
Description -
Location Contig57: 175487-178186
Sequence    

Annotation

kegg
ID rcu:RCOM_1494500
description Peroxidase 57 precursor, putative (EC:1.11.1.7)
nr
ID XP_002516056.1
description Peroxidase 57 precursor, putative [Ricinus communis]
swissprot
ID O81755
description Putative Peroxidase 48 OS=Arabidopsis thaliana GN=PER48 PE=3 SV=3
trembl
ID B9RQN7
description Peroxidase OS=Ricinus communis GN=RCOM_1494500 PE=3 SV=1
Gene Ontology
ID GO:0004601
description peroxidase 48

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49297: 175904-176103 , PASA_asmbl_49298: 179101-184984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000057_100 0.0 - - Peroxidase 57 precursor, putative [Ricinus communis]
2 Hb_117639_010 0.0845810012 - - hypothetical protein B456_013G070100 [Gossypium raimondii]
3 Hb_000946_070 0.1369934073 - - chaperone protein DNAj, putative [Ricinus communis]
4 Hb_001488_350 0.1471591546 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008143_040 0.1515567654 - - Alpha-expansin 4 precursor, putative [Ricinus communis]
6 Hb_000181_220 0.1604301629 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
7 Hb_143766_070 0.1623143018 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
8 Hb_004667_030 0.1652653195 - - hypothetical protein VITISV_034568 [Vitis vinifera]
9 Hb_001675_040 0.1669061427 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004162_140 0.1688388463 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
11 Hb_033772_060 0.1706415171 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007416_290 0.1712073971 - - PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
13 Hb_004374_160 0.1727998878 transcription factor TF Family: bHLH hypothetical protein JCGZ_20587 [Jatropha curcas]
14 Hb_001677_090 0.1735607311 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
15 Hb_000140_500 0.1782141092 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_007017_100 0.1803142544 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
17 Hb_007134_030 0.1823991656 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
18 Hb_000152_880 0.1828650801 - - -
19 Hb_002817_050 0.1840121543 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
20 Hb_009456_010 0.1842175936 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]

Gene co-expression network

sample Hb_000057_100 Hb_000057_100 Hb_117639_010 Hb_117639_010 Hb_000057_100--Hb_117639_010 Hb_000946_070 Hb_000946_070 Hb_000057_100--Hb_000946_070 Hb_001488_350 Hb_001488_350 Hb_000057_100--Hb_001488_350 Hb_008143_040 Hb_008143_040 Hb_000057_100--Hb_008143_040 Hb_000181_220 Hb_000181_220 Hb_000057_100--Hb_000181_220 Hb_143766_070 Hb_143766_070 Hb_000057_100--Hb_143766_070 Hb_007875_020 Hb_007875_020 Hb_117639_010--Hb_007875_020 Hb_000337_030 Hb_000337_030 Hb_117639_010--Hb_000337_030 Hb_022250_160 Hb_022250_160 Hb_117639_010--Hb_022250_160 Hb_117639_010--Hb_008143_040 Hb_005663_090 Hb_005663_090 Hb_117639_010--Hb_005663_090 Hb_007416_290 Hb_007416_290 Hb_000946_070--Hb_007416_290 Hb_001677_090 Hb_001677_090 Hb_000946_070--Hb_001677_090 Hb_029510_120 Hb_029510_120 Hb_000946_070--Hb_029510_120 Hb_000946_070--Hb_117639_010 Hb_000946_070--Hb_022250_160 Hb_001488_350--Hb_000181_220 Hb_004374_160 Hb_004374_160 Hb_001488_350--Hb_004374_160 Hb_039435_010 Hb_039435_010 Hb_001488_350--Hb_039435_010 Hb_000416_090 Hb_000416_090 Hb_001488_350--Hb_000416_090 Hb_000621_030 Hb_000621_030 Hb_001488_350--Hb_000621_030 Hb_001278_090 Hb_001278_090 Hb_001488_350--Hb_001278_090 Hb_008143_040--Hb_007416_290 Hb_009545_030 Hb_009545_030 Hb_008143_040--Hb_009545_030 Hb_007134_030 Hb_007134_030 Hb_008143_040--Hb_007134_030 Hb_000115_250 Hb_000115_250 Hb_008143_040--Hb_000115_250 Hb_029639_030 Hb_029639_030 Hb_000181_220--Hb_029639_030 Hb_033772_060 Hb_033772_060 Hb_000181_220--Hb_033772_060 Hb_007101_140 Hb_007101_140 Hb_000181_220--Hb_007101_140 Hb_007894_080 Hb_007894_080 Hb_000181_220--Hb_007894_080 Hb_001405_040 Hb_001405_040 Hb_000181_220--Hb_001405_040 Hb_004881_070 Hb_004881_070 Hb_143766_070--Hb_004881_070 Hb_143766_070--Hb_004374_160 Hb_003052_020 Hb_003052_020 Hb_143766_070--Hb_003052_020 Hb_000635_100 Hb_000635_100 Hb_143766_070--Hb_000635_100 Hb_000639_010 Hb_000639_010 Hb_143766_070--Hb_000639_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0119557 0.0883462 0.167113 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.025879 0 0.103364 0.108071

CAGE analysis