Hb_000057_150

Information

Type -
Description -
Location Contig57: 210322-211626
Sequence    

Annotation

kegg
ID eus:EUTSA_v10009202mg
description hypothetical protein
nr
ID XP_006416929.1
description hypothetical protein EUTSA_v10009202mg [Eutrema salsugineum]
swissprot
ID -
description -
trembl
ID V4KZ14
description Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10009202mg PE=4 SV=1
Gene Ontology
ID GO:0005886
description translation machinery associated protein tma7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49304: 209984-211740 , PASA_asmbl_49305: 211057-211389
cDNA
(Sanger)
(ID:Location)		 002_P02.ab1: 210236-211739 , 003_F01.ab1: 210210-211739 , 004_H23.ab1: 210219-211740 , 009_G17.ab1: 210084-211739 , 009_N19.ab1: 210128-211740 , 015_C07.ab1: 210122-211740 , 015_M19.ab1: 210017-211740 , 021_B10.ab1: 210017-211740 , 024_B04.ab1: 210097-211740 , 024_F02.ab1: 210237-211737 , 024_M21.ab1: 210219-211740 , 025_G05.ab1: 210081-211740 , 025_L20.ab1: 210186-211739 , 026_F13.ab1: 210116-211740 , 029_K10.ab1: 210189-211692 , 031_O19.ab1: 210235-211739 , 036_B11.ab1: 210095-211739 , 037_F03.ab1: 209984-211740 , 037_I01.ab1: 210144-211739 , 038_F19.ab1: 210187-211739 , 040_E14.ab1: 210122-211740 , 045_J07.ab1: 210126-211739 , 046_K21.ab1: 210104-211708

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_130 0.0 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
2 Hb_000013_040 0.0 - - -
3 Hb_000013_070 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_000014_180 0.0 - - PREDICTED: endo-1,4-beta-xylanase D-like [Fragaria vesca subsp. vesca]
5 Hb_000021_080 0.0 - - -
6 Hb_000031_270 0.0 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
7 Hb_000035_070 0.0 - - PREDICTED: uncharacterized protein LOC104814513 [Tarenaya hassleriana]
8 Hb_000041_140 0.0 - - -
9 Hb_000043_130 0.0 - - -
10 Hb_000045_240 0.0 - - -
11 Hb_000056_270 0.0 - - Origin recognition complex subunit, putative [Ricinus communis]
12 Hb_000057_150 0.0 - - hypothetical protein EUTSA_v10009202mg [Eutrema salsugineum]
13 Hb_000059_250 0.0 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
14 Hb_000062_160 0.0 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
15 Hb_000068_050 0.0 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
16 Hb_000073_060 0.0 - - hypothetical protein L484_026849 [Morus notabilis]
17 Hb_000078_150 0.0 - - -
18 Hb_000084_090 0.0 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
19 Hb_000100_250 0.0 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
20 Hb_000110_100 0.0 - - -

Gene co-expression network

sample Hb_000008_130 Hb_000008_130 Hb_000013_040 Hb_000013_040 Hb_000008_130--Hb_000013_040 Hb_000013_070 Hb_000013_070 Hb_000008_130--Hb_000013_070 Hb_000014_180 Hb_000014_180 Hb_000008_130--Hb_000014_180 Hb_000021_080 Hb_000021_080 Hb_000008_130--Hb_000021_080 Hb_000031_270 Hb_000031_270 Hb_000008_130--Hb_000031_270 Hb_000035_070 Hb_000035_070 Hb_000008_130--Hb_000035_070 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000008_130--Hb_000035_070 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000008_130--Hb_000035_070 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000008_130--Hb_000035_070 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000008_130--Hb_000035_070 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000008_130--Hb_000035_070 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000008_130--Hb_000035_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.366787 0

CAGE analysis